Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TNFP01375 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
TNFP01375 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
TNFP01375 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.28■□□□□ 0.52
TNFP01375 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
TNFP01375 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TNFP01375 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
TNFP01375 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TNFP01375 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TNFP01375 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.28■□□□□ 0.52
TNFP01375 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.28■□□□□ 0.52
TNFP01375 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
TNFP01375 KRT18P56-201ENST00000507275 550 ntBASIC18.28■□□□□ 0.52
TNFP01375 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.28■□□□□ 0.52
TNFP01375 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.28■□□□□ 0.52
TNFP01375 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.28■□□□□ 0.52
TNFP01375 AL136038.4-201ENST00000603606 1261 ntBASIC18.28■□□□□ 0.52
TNFP01375 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.28■□□□□ 0.52
TNFP01375 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.28■□□□□ 0.52
TNFP01375 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.28■□□□□ 0.52
TNFP01375 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
TNFP01375 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.28■□□□□ 0.52
TNFP01375 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TNFP01375 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
TNFP01375 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TNFP01375 AC006333.2-201ENST00000607957 2099 ntBASIC18.27■□□□□ 0.52
TNFP01375 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TNFP01375 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TNFP01375 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TNFP01375 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.27■□□□□ 0.52
TNFP01375 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TNFP01375 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.27■□□□□ 0.52
TNFP01375 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.52
TNFP01375 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
TNFP01375 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.27■□□□□ 0.52
TNFP01375 AC079602.3-201ENST00000623931 403 ntBASIC18.27■□□□□ 0.52
TNFP01375 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TNFP01375 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TNFP01375 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
TNFP01375 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TNFP01375 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TNFP01375 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
TNFP01375 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
TNFP01375 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.51
TNFP01375 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.26■□□□□ 0.51
TNFP01375 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.26■□□□□ 0.51
TNFP01375 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TNFP01375 AL391807.1-203ENST00000604392 2365 ntBASIC18.26■□□□□ 0.51
TNFP01375 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
TNFP01375 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TNFP01375 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.26■□□□□ 0.51
TNFP01375 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TNFP01375 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.26■□□□□ 0.51
TNFP01375 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TNFP01375 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.26■□□□□ 0.51
TNFP01375 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
TNFP01375 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.26■□□□□ 0.51
TNFP01375 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.26■□□□□ 0.51
TNFP01375 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.26■□□□□ 0.51
TNFP01375 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TNFP01375 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
TNFP01375 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.26■□□□□ 0.51
TNFP01375 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.26■□□□□ 0.51
TNFP01375 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TNFP01375 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TNFP01375 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.26■□□□□ 0.51
TNFP01375 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TNFP01375 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.26■□□□□ 0.51
TNFP01375 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.26■□□□□ 0.51
TNFP01375 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TNFP01375 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TNFP01375 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.26■□□□□ 0.51
TNFP01375 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TNFP01375 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
TNFP01375 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.25■□□□□ 0.51
TNFP01375 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TNFP01375 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
TNFP01375 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.25■□□□□ 0.51
TNFP01375 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.25■□□□□ 0.51
TNFP01375 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TNFP01375 HLA-F-220ENST00000434407 884 ntBASIC18.25■□□□□ 0.51
TNFP01375 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.25■□□□□ 0.51
TNFP01375 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TNFP01375 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TNFP01375 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.25■□□□□ 0.51
TNFP01375 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.25■□□□□ 0.51
TNFP01375 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.25■□□□□ 0.51
TNFP01375 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TNFP01375 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TNFP01375 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.25■□□□□ 0.51
TNFP01375 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TNFP01375 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TNFP01375 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TNFP01375 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
TNFP01375 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TNFP01375 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TNFP01375 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.25■□□□□ 0.51
TNFP01375 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TNFP01375 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.24■□□□□ 0.51
TNFP01375 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms