Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1BO60663 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1BO60663 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1BO60663 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1BO60663 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1BO60663 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1BO60663 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
LMX1BO60663 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.47■□□□□ 0.23
LMX1BO60663 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1BO60663 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.47■□□□□ 0.23
LMX1BO60663 RBM17P1-201ENST00000453646 1190 ntBASIC16.47■□□□□ 0.23
LMX1BO60663 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1BO60663 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.47■□□□□ 0.23
LMX1BO60663 NUDT16P1-203ENST00000513809 620 ntBASIC16.47■□□□□ 0.23
LMX1BO60663 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LMX1BO60663 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.47■□□□□ 0.23
LMX1BO60663 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.47■□□□□ 0.23
LMX1BO60663 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.47■□□□□ 0.23
LMX1BO60663 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.47■□□□□ 0.23
LMX1BO60663 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.47■□□□□ 0.23
LMX1BO60663 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
LMX1BO60663 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1BO60663 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1BO60663 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1BO60663 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1BO60663 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
LMX1BO60663 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1BO60663 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
LMX1BO60663 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1BO60663 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16.46■□□□□ 0.23
LMX1BO60663 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1BO60663 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1BO60663 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1BO60663 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1BO60663 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.46■□□□□ 0.23
LMX1BO60663 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.46■□□□□ 0.23
LMX1BO60663 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1BO60663 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1BO60663 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1BO60663 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1BO60663 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.46■□□□□ 0.23
LMX1BO60663 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC16.46■□□□□ 0.23
LMX1BO60663 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1BO60663 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1BO60663 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1BO60663 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
LMX1BO60663 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
LMX1BO60663 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
LMX1BO60663 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
LMX1BO60663 AL133373.2-201ENST00000623187 2828 ntBASIC16.46■□□□□ 0.22
LMX1BO60663 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1BO60663 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
LMX1BO60663 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1BO60663 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
LMX1BO60663 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
LMX1BO60663 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
LMX1BO60663 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1BO60663 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
LMX1BO60663 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1BO60663 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1BO60663 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1BO60663 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
LMX1BO60663 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC16.45■□□□□ 0.22
LMX1BO60663 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.45■□□□□ 0.22
LMX1BO60663 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.45■□□□□ 0.22
LMX1BO60663 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.45■□□□□ 0.22
LMX1BO60663 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.45■□□□□ 0.22
LMX1BO60663 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC16.45■□□□□ 0.22
LMX1BO60663 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1BO60663 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.45■□□□□ 0.22
LMX1BO60663 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC16.45■□□□□ 0.22
LMX1BO60663 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
LMX1BO60663 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1BO60663 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
LMX1BO60663 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1BO60663 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1BO60663 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
LMX1BO60663 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.45■□□□□ 0.22
LMX1BO60663 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1BO60663 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1BO60663 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.44■□□□□ 0.22
LMX1BO60663 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1BO60663 BICD1-207ENST00000551848 1962 ntBASIC16.44■□□□□ 0.22
LMX1BO60663 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1BO60663 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.44■□□□□ 0.22
LMX1BO60663 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.44■□□□□ 0.22
LMX1BO60663 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1BO60663 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.44■□□□□ 0.22
LMX1BO60663 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.44■□□□□ 0.22
LMX1BO60663 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.44■□□□□ 0.22
LMX1BO60663 LINC01568-207ENST00000641790 1380 ntBASIC16.44■□□□□ 0.22
LMX1BO60663 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.44■□□□□ 0.22
LMX1BO60663 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1BO60663 AC005521.1-201ENST00000393351 872 ntBASIC16.44■□□□□ 0.22
LMX1BO60663 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.44■□□□□ 0.22
LMX1BO60663 MIR1238-201ENST00000408483 83 ntBASIC16.44■□□□□ 0.22
LMX1BO60663 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.44■□□□□ 0.22
LMX1BO60663 TSPY21P-201ENST00000433481 731 ntBASIC16.44■□□□□ 0.22
LMX1BO60663 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.44■□□□□ 0.22
LMX1BO60663 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms