Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
SLC28A1O00337 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
SLC28A1O00337 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
SLC28A1O00337 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.05■□□□□ 0.48
SLC28A1O00337 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.05■□□□□ 0.48
SLC28A1O00337 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.05■□□□□ 0.48
SLC28A1O00337 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SLC28A1O00337 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SLC28A1O00337 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.04■□□□□ 0.48
SLC28A1O00337 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.04■□□□□ 0.48
SLC28A1O00337 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SLC28A1O00337 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SLC28A1O00337 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SLC28A1O00337 ABALON-201ENST00000629058 1903 ntBASIC18.04■□□□□ 0.48
SLC28A1O00337 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SLC28A1O00337 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 AC128676.1-201ENST00000454392 318 ntBASIC18.04■□□□□ 0.48
SLC28A1O00337 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.04■□□□□ 0.48
SLC28A1O00337 C1QBPP2-201ENST00000528754 825 ntBASIC18.04■□□□□ 0.48
SLC28A1O00337 AC026271.3-201ENST00000571884 352 ntBASIC18.04■□□□□ 0.48
SLC28A1O00337 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 AC011298.2-201ENST00000617989 482 ntBASIC18.04■□□□□ 0.48
SLC28A1O00337 CR392000.1-201ENST00000624770 1228 ntBASIC18.04■□□□□ 0.48
SLC28A1O00337 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
SLC28A1O00337 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
SLC28A1O00337 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
SLC28A1O00337 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SLC28A1O00337 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.03■□□□□ 0.48
SLC28A1O00337 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
SLC28A1O00337 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
SLC28A1O00337 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.03■□□□□ 0.48
SLC28A1O00337 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
SLC28A1O00337 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.03■□□□□ 0.48
SLC28A1O00337 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.03■□□□□ 0.48
SLC28A1O00337 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.03■□□□□ 0.48
SLC28A1O00337 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.03■□□□□ 0.48
SLC28A1O00337 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.03■□□□□ 0.48
SLC28A1O00337 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SLC28A1O00337 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.03■□□□□ 0.48
SLC28A1O00337 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SLC28A1O00337 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.03■□□□□ 0.48
SLC28A1O00337 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SLC28A1O00337 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SLC28A1O00337 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.02■□□□□ 0.48
SLC28A1O00337 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SLC28A1O00337 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SLC28A1O00337 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SLC28A1O00337 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SLC28A1O00337 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SLC28A1O00337 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.02■□□□□ 0.48
SLC28A1O00337 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SLC28A1O00337 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms