Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 BMF-207ENST00000559701 630 ntTSL 3 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP42Q9H9J4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP42Q9H9J4 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP42Q9H9J4 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP42Q9H9J4 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP42Q9H9J4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP42Q9H9J4 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP42Q9H9J4 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC23.8■■□□□ 1.4
USP42Q9H9J4 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP42Q9H9J4 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC23.8■■□□□ 1.4
USP42Q9H9J4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC23.8■■□□□ 1.4
USP42Q9H9J4 UBC-206ENST00000538617 1303 ntTSL 5 BASIC23.8■■□□□ 1.4
USP42Q9H9J4 BAALC-202ENST00000306391 243 ntTSL 5 BASIC23.8■■□□□ 1.4
USP42Q9H9J4 BAALC-204ENST00000330955 222 ntTSL 5 BASIC23.8■■□□□ 1.4
USP42Q9H9J4 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC23.8■■□□□ 1.4
USP42Q9H9J4 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC23.8■■□□□ 1.4
USP42Q9H9J4 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP42Q9H9J4 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP42Q9H9J4 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC23.8■■□□□ 1.4
USP42Q9H9J4 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP42Q9H9J4 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP42Q9H9J4 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC23.79■■□□□ 1.4
USP42Q9H9J4 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC23.79■■□□□ 1.4
USP42Q9H9J4 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP42Q9H9J4 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP42Q9H9J4 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP42Q9H9J4 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
USP42Q9H9J4 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
USP42Q9H9J4 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
USP42Q9H9J4 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP42Q9H9J4 Z83836.1-201ENST00000624605 1642 ntBASIC23.79■■□□□ 1.4
USP42Q9H9J4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP42Q9H9J4 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP42Q9H9J4 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC23.79■■□□□ 1.4
USP42Q9H9J4 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP42Q9H9J4 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP42Q9H9J4 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC23.79■■□□□ 1.4
USP42Q9H9J4 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP42Q9H9J4 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP42Q9H9J4 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP42Q9H9J4 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC23.79■■□□□ 1.4
USP42Q9H9J4 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC23.79■■□□□ 1.4
USP42Q9H9J4 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
USP42Q9H9J4 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC23.78■■□□□ 1.4
USP42Q9H9J4 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC23.78■■□□□ 1.4
USP42Q9H9J4 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC23.78■■□□□ 1.4
USP42Q9H9J4 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC23.78■■□□□ 1.4
USP42Q9H9J4 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC23.78■■□□□ 1.4
USP42Q9H9J4 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC23.78■■□□□ 1.4
USP42Q9H9J4 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP42Q9H9J4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC23.77■■□□□ 1.4
USP42Q9H9J4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
USP42Q9H9J4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP42Q9H9J4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
USP42Q9H9J4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP42Q9H9J4 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP42Q9H9J4 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC23.77■■□□□ 1.4
USP42Q9H9J4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USP42Q9H9J4 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP42Q9H9J4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP42Q9H9J4 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC23.77■■□□□ 1.4
USP42Q9H9J4 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP42Q9H9J4 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP42Q9H9J4 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USP42Q9H9J4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC23.77■■□□□ 1.39
USP42Q9H9J4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.39
USP42Q9H9J4 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP42Q9H9J4 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
USP42Q9H9J4 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP42Q9H9J4 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC23.76■■□□□ 1.39
USP42Q9H9J4 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP42Q9H9J4 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP42Q9H9J4 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC23.76■■□□□ 1.39
USP42Q9H9J4 AC116562.4-201ENST00000641316 2276 ntBASIC23.76■■□□□ 1.39
USP42Q9H9J4 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP42Q9H9J4 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP42Q9H9J4 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP42Q9H9J4 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
USP42Q9H9J4 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms