Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.99■□□□□ 0.95
CCSER1Q9C0I3 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCSER1Q9C0I3 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 RNF165-205ENST00000588679 2904 ntBASIC20.98■□□□□ 0.95
CCSER1Q9C0I3 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 AP003041.3-201ENST00000527151 707 ntBASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 MIR3180-5-201ENST00000583743 153 ntBASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCSER1Q9C0I3 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 TSPY14P-201ENST00000303979 915 ntBASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 CCR12P-201ENST00000446203 998 ntBASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 C2orf69P3-201ENST00000565542 1120 ntBASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CCSER1Q9C0I3 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.95
CCSER1Q9C0I3 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 AC007663.1-201ENST00000438948 1240 ntBASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 AC116562.4-202ENST00000641738 218 ntBASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 NEFHP1-201ENST00000412845 2629 ntBASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.95■□□□□ 0.94
CCSER1Q9C0I3 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.94■□□□□ 0.94
CCSER1Q9C0I3 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CCSER1Q9C0I3 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.94■□□□□ 0.94
CCSER1Q9C0I3 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCSER1Q9C0I3 AC034236.2-201ENST00000606662 1610 ntBASIC20.94■□□□□ 0.94
CCSER1Q9C0I3 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCSER1Q9C0I3 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.94■□□□□ 0.94
CCSER1Q9C0I3 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.94■□□□□ 0.94
CCSER1Q9C0I3 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCSER1Q9C0I3 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCSER1Q9C0I3 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CCSER1Q9C0I3 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.94■□□□□ 0.94
CCSER1Q9C0I3 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCSER1Q9C0I3 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms