Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHKBP1Q8TBC3 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 TNXA-203ENST00000507684 2038 ntBASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 MIR3180-5-201ENST00000583743 153 ntBASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 AL121894.2-201ENST00000602977 491 ntBASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHKBP1Q8TBC3 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 TREX1-205ENST00000625293 1783 ntBASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 BX323043.1-201ENST00000641006 1765 ntBASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 AC034232.1-201ENST00000506026 1064 ntBASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.67■□□□□ 0.74
SHKBP1Q8TBC3 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 CLEC4GP1-201ENST00000596555 870 ntBASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 Z82202.1-201ENST00000623446 1880 ntBASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHKBP1Q8TBC3 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.65■□□□□ 0.74
SHKBP1Q8TBC3 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms