Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 GCSHP5-201ENST00000443090 522 ntBASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 AC083906.6-201ENST00000641366 219 ntBASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 FEM1AP3-201ENST00000403722 1741 ntBASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.44■□□□□ 0.38
DEPDC4Q8N2C3 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 PKD1P1-201ENST00000458669 6805 ntBASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.43■□□□□ 0.38
DEPDC4Q8N2C3 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 UBE2SP1-201ENST00000450587 669 ntBASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 C1QBPP2-201ENST00000528754 825 ntBASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 AC006557.6-201ENST00000623071 864 ntBASIC17.42■□□□□ 0.38
DEPDC4Q8N2C3 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms