Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CCDC40Q4G0X9 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 AC005082.1-201ENST00000413042 2259 ntBASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 FAM197Y1-201ENST00000421178 764 ntBASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 FAM207BP-201ENST00000447172 505 ntBASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC40Q4G0X9 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC40Q4G0X9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC40Q4G0X9 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC40Q4G0X9 HEIH-201ENST00000623091 1652 ntBASIC20.64■□□□□ 0.9
CCDC40Q4G0X9 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC40Q4G0X9 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC40Q4G0X9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 AL135905.2-201ENST00000584934 1404 ntBASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 AL158047.1-201ENST00000445918 881 ntBASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 AC008040.2-201ENST00000461049 708 ntBASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 AC011506.1-201ENST00000474329 610 ntBASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 MIR6786-201ENST00000616843 113 ntBASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC40Q4G0X9 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 AC090164.3-201ENST00000610780 2143 ntBASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 B3GAT3P1-201ENST00000471720 806 ntBASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC40Q4G0X9 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 AC098590.1-201ENST00000468126 897 ntBASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 AC130371.2-201ENST00000619443 611 ntBASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms