Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AC005082.1-201ENST00000413042 2259 ntBASIC19.52■□□□□ 0.72
CDH6P55285 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CDH6P55285 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDH6P55285 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDH6P55285 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDH6P55285 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CDH6P55285 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.52■□□□□ 0.72
CDH6P55285 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.52■□□□□ 0.72
CDH6P55285 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.52■□□□□ 0.72
CDH6P55285 AC097488.1-201ENST00000507834 756 ntBASIC19.52■□□□□ 0.72
CDH6P55285 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.52■□□□□ 0.72
CDH6P55285 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.52■□□□□ 0.72
CDH6P55285 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.52■□□□□ 0.72
CDH6P55285 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.52■□□□□ 0.72
CDH6P55285 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDH6P55285 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDH6P55285 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CDH6P55285 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDH6P55285 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDH6P55285 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.71
CDH6P55285 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.52■□□□□ 0.71
CDH6P55285 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.52■□□□□ 0.71
CDH6P55285 NEFHP1-201ENST00000412845 2629 ntBASIC19.52■□□□□ 0.71
CDH6P55285 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
CDH6P55285 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.52■□□□□ 0.71
CDH6P55285 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CDH6P55285 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH6P55285 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.51■□□□□ 0.71
CDH6P55285 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDH6P55285 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDH6P55285 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.51■□□□□ 0.71
CDH6P55285 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
CDH6P55285 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
CDH6P55285 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.51■□□□□ 0.71
CDH6P55285 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.51■□□□□ 0.71
CDH6P55285 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH6P55285 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH6P55285 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH6P55285 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH6P55285 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.51■□□□□ 0.71
CDH6P55285 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDH6P55285 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH6P55285 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH6P55285 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.51■□□□□ 0.71
CDH6P55285 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDH6P55285 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.51■□□□□ 0.71
CDH6P55285 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.51■□□□□ 0.71
CDH6P55285 RCC2P3-201ENST00000418112 1537 ntBASIC19.51■□□□□ 0.71
CDH6P55285 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.51■□□□□ 0.71
CDH6P55285 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH6P55285 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.5■□□□□ 0.71
CDH6P55285 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH6P55285 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH6P55285 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.5■□□□□ 0.71
CDH6P55285 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.5■□□□□ 0.71
CDH6P55285 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH6P55285 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH6P55285 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CDH6P55285 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH6P55285 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH6P55285 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CDH6P55285 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH6P55285 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.5■□□□□ 0.71
CDH6P55285 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.5■□□□□ 0.71
CDH6P55285 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.5■□□□□ 0.71
CDH6P55285 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.5■□□□□ 0.71
CDH6P55285 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.5■□□□□ 0.71
CDH6P55285 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH6P55285 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH6P55285 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH6P55285 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.5■□□□□ 0.71
CDH6P55285 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.49■□□□□ 0.71
CDH6P55285 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CDH6P55285 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDH6P55285 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.49■□□□□ 0.71
CDH6P55285 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.49■□□□□ 0.71
CDH6P55285 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDH6P55285 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CDH6P55285 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDH6P55285 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDH6P55285 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.49■□□□□ 0.71
CDH6P55285 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDH6P55285 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CDH6P55285 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.49■□□□□ 0.71
CDH6P55285 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDH6P55285 TSPY7P-201ENST00000431358 1114 ntBASIC19.49■□□□□ 0.71
CDH6P55285 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDH6P55285 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.49■□□□□ 0.71
CDH6P55285 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.49■□□□□ 0.71
CDH6P55285 AP003071.4-201ENST00000562276 1284 ntBASIC19.49■□□□□ 0.71
CDH6P55285 MIR4785-201ENST00000585005 73 ntBASIC19.49■□□□□ 0.71
CDH6P55285 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.49■□□□□ 0.71
CDH6P55285 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.49■□□□□ 0.71
CDH6P55285 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.49■□□□□ 0.71
CDH6P55285 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDH6P55285 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.49■□□□□ 0.71
CDH6P55285 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDH6P55285 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CDH6P55285 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDH6P55285 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms