Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
PTPN4P29074 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN4P29074 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
PTPN4P29074 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN4P29074 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN4P29074 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.83■□□□□ 0.6
PTPN4P29074 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.83■□□□□ 0.6
PTPN4P29074 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN4P29074 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN4P29074 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.83■□□□□ 0.6
PTPN4P29074 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.82■□□□□ 0.6
PTPN4P29074 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
PTPN4P29074 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.82■□□□□ 0.6
PTPN4P29074 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
PTPN4P29074 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.82■□□□□ 0.6
PTPN4P29074 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
PTPN4P29074 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.82■□□□□ 0.6
PTPN4P29074 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.82■□□□□ 0.6
PTPN4P29074 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.82■□□□□ 0.6
PTPN4P29074 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
PTPN4P29074 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.82■□□□□ 0.6
PTPN4P29074 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
PTPN4P29074 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.82■□□□□ 0.6
PTPN4P29074 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 ABALON-201ENST00000629058 1903 ntBASIC18.82■□□□□ 0.6
PTPN4P29074 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
PTPN4P29074 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
PTPN4P29074 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN4P29074 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.81■□□□□ 0.6
PTPN4P29074 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.81■□□□□ 0.6
PTPN4P29074 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 AC124283.5-201ENST00000624661 1809 ntBASIC18.81■□□□□ 0.6
PTPN4P29074 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.81■□□□□ 0.6
PTPN4P29074 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
PTPN4P29074 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.81■□□□□ 0.6
PTPN4P29074 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.81■□□□□ 0.6
PTPN4P29074 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.81■□□□□ 0.6
PTPN4P29074 KRT16P5-201ENST00000455284 522 ntBASIC18.81■□□□□ 0.6
PTPN4P29074 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.81■□□□□ 0.6
PTPN4P29074 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
PTPN4P29074 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.81■□□□□ 0.6
PTPN4P29074 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.81■□□□□ 0.6
PTPN4P29074 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.81■□□□□ 0.6
PTPN4P29074 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.81■□□□□ 0.6
PTPN4P29074 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.81■□□□□ 0.6
PTPN4P29074 AL121906.2-201ENST00000621597 723 ntBASIC18.81■□□□□ 0.6
PTPN4P29074 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
PTPN4P29074 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.81■□□□□ 0.6
PTPN4P29074 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 NBPF21P-201ENST00000425093 1451 ntBASIC18.81■□□□□ 0.6
PTPN4P29074 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN4P29074 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.81■□□□□ 0.6
PTPN4P29074 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.81■□□□□ 0.6
PTPN4P29074 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.81■□□□□ 0.6
PTPN4P29074 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
PTPN4P29074 AC139713.2-201ENST00000641328 2723 ntBASIC18.8■□□□□ 0.6
PTPN4P29074 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
PTPN4P29074 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
PTPN4P29074 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 HLA-G-202ENST00000376815 851 ntBASIC18.8■□□□□ 0.6
PTPN4P29074 HLA-G-203ENST00000376818 1127 ntBASIC18.8■□□□□ 0.6
PTPN4P29074 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.8■□□□□ 0.6
PTPN4P29074 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.8■□□□□ 0.6
PTPN4P29074 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms