Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.29■□□□□ 0.52
HOXC4P09017 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC4P09017 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.29■□□□□ 0.52
HOXC4P09017 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HOXC4P09017 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.29■□□□□ 0.52
HOXC4P09017 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.29■□□□□ 0.52
HOXC4P09017 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.29■□□□□ 0.52
HOXC4P09017 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC4P09017 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC4P09017 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC4P09017 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
HOXC4P09017 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
HOXC4P09017 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
HOXC4P09017 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC4P09017 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.28■□□□□ 0.52
HOXC4P09017 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HOXC4P09017 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.28■□□□□ 0.52
HOXC4P09017 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
HOXC4P09017 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
HOXC4P09017 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.28■□□□□ 0.52
HOXC4P09017 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.28■□□□□ 0.52
HOXC4P09017 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
HOXC4P09017 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 KRT8P50-201ENST00000562022 1438 ntBASIC18.28■□□□□ 0.52
HOXC4P09017 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HOXC4P09017 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.28■□□□□ 0.52
HOXC4P09017 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HOXC4P09017 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.28■□□□□ 0.52
HOXC4P09017 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HOXC4P09017 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC4P09017 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.27■□□□□ 0.52
HOXC4P09017 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC4P09017 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC4P09017 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC4P09017 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
HOXC4P09017 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC4P09017 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC4P09017 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC4P09017 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
HOXC4P09017 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.27■□□□□ 0.52
HOXC4P09017 AC069148.1-201ENST00000608741 768 ntBASIC18.27■□□□□ 0.52
HOXC4P09017 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.27■□□□□ 0.52
HOXC4P09017 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC4P09017 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC4P09017 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HOXC4P09017 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
HOXC4P09017 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HOXC4P09017 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HOXC4P09017 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HOXC4P09017 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
HOXC4P09017 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
HOXC4P09017 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
HOXC4P09017 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.26■□□□□ 0.51
HOXC4P09017 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HOXC4P09017 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.26■□□□□ 0.51
HOXC4P09017 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.26■□□□□ 0.51
HOXC4P09017 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.26■□□□□ 0.51
HOXC4P09017 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.26■□□□□ 0.51
HOXC4P09017 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.26■□□□□ 0.51
HOXC4P09017 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.26■□□□□ 0.51
HOXC4P09017 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.26■□□□□ 0.51
HOXC4P09017 AC011498.5-201ENST00000592027 486 ntBASIC18.26■□□□□ 0.51
HOXC4P09017 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HOXC4P09017 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.26■□□□□ 0.51
HOXC4P09017 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.26■□□□□ 0.51
HOXC4P09017 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.26■□□□□ 0.51
HOXC4P09017 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC4P09017 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.26■□□□□ 0.51
HOXC4P09017 AL162741.1-201ENST00000565563 1558 ntBASIC18.25■□□□□ 0.51
HOXC4P09017 AC093525.10-201ENST00000625130 1569 ntBASIC18.25■□□□□ 0.51
HOXC4P09017 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 AC116562.4-201ENST00000641316 2276 ntBASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms