Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RTN3O95197 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
RTN3O95197 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RTN3O95197 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RTN3O95197 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RTN3O95197 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTN3O95197 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RTN3O95197 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RTN3O95197 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTN3O95197 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RTN3O95197 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTN3O95197 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RTN3O95197 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.75■□□□□ 0.75
RTN3O95197 AL441883.1-201ENST00000566170 1045 ntBASIC19.75■□□□□ 0.75
RTN3O95197 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.75■□□□□ 0.75
RTN3O95197 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.75■□□□□ 0.75
RTN3O95197 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.75■□□□□ 0.75
RTN3O95197 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.75■□□□□ 0.75
RTN3O95197 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTN3O95197 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RTN3O95197 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RTN3O95197 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.75■□□□□ 0.75
RTN3O95197 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RTN3O95197 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RTN3O95197 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
RTN3O95197 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
RTN3O95197 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RTN3O95197 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
RTN3O95197 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RTN3O95197 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.74■□□□□ 0.75
RTN3O95197 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.74■□□□□ 0.75
RTN3O95197 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.74■□□□□ 0.75
RTN3O95197 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
RTN3O95197 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
RTN3O95197 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RTN3O95197 AL109659.2-201ENST00000606809 1674 ntBASIC19.74■□□□□ 0.75
RTN3O95197 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
RTN3O95197 AC036111.1-201ENST00000533973 1582 ntBASIC19.74■□□□□ 0.75
RTN3O95197 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
RTN3O95197 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RTN3O95197 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.73■□□□□ 0.75
RTN3O95197 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.73■□□□□ 0.75
RTN3O95197 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
RTN3O95197 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
RTN3O95197 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 RCC2P3-201ENST00000418112 1537 ntBASIC19.73■□□□□ 0.75
RTN3O95197 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.73■□□□□ 0.75
RTN3O95197 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.73■□□□□ 0.75
RTN3O95197 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.73■□□□□ 0.75
RTN3O95197 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.73■□□□□ 0.75
RTN3O95197 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.73■□□□□ 0.75
RTN3O95197 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.73■□□□□ 0.75
RTN3O95197 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
RTN3O95197 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.73■□□□□ 0.75
RTN3O95197 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RTN3O95197 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.73■□□□□ 0.75
RTN3O95197 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.73■□□□□ 0.75
RTN3O95197 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RTN3O95197 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTN3O95197 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTN3O95197 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTN3O95197 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTN3O95197 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTN3O95197 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.72■□□□□ 0.75
RTN3O95197 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTN3O95197 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.72■□□□□ 0.75
RTN3O95197 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.72■□□□□ 0.75
RTN3O95197 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.72■□□□□ 0.75
RTN3O95197 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.72■□□□□ 0.75
RTN3O95197 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.72■□□□□ 0.75
RTN3O95197 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.72■□□□□ 0.75
RTN3O95197 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTN3O95197 AC087388.1-201ENST00000571370 1112 ntBASIC19.72■□□□□ 0.75
RTN3O95197 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
RTN3O95197 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
RTN3O95197 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.72■□□□□ 0.75
RTN3O95197 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTN3O95197 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTN3O95197 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RTN3O95197 KRT8P32-201ENST00000512863 1461 ntBASIC19.72■□□□□ 0.75
RTN3O95197 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms