Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HMGB3O15347 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HMGB3O15347 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
HMGB3O15347 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGB3O15347 AC020916.1-201ENST00000587762 1774 ntBASIC15.11■□□□□ 0.01
HMGB3O15347 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
HMGB3O15347 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGB3O15347 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGB3O15347 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
HMGB3O15347 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.1■□□□□ 0.01
HMGB3O15347 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGB3O15347 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
HMGB3O15347 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC15.1■□□□□ 0.01
HMGB3O15347 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
HMGB3O15347 AL031432.3-201ENST00000607698 485 ntBASIC15.1■□□□□ 0.01
HMGB3O15347 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
HMGB3O15347 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGB3O15347 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
HMGB3O15347 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 IRX1P1-201ENST00000438849 1838 ntBASIC15.1■□□□□ 0.01
HMGB3O15347 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
HMGB3O15347 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC15.1■□□□□ 0.01
HMGB3O15347 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB3O15347 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC15.09■□□□□ 0.01
HMGB3O15347 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 AC004854.2-201ENST00000608450 1441 ntBASIC15.09■□□□□ 0.01
HMGB3O15347 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
HMGB3O15347 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
HMGB3O15347 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC15.09■□□□□ 0.01
HMGB3O15347 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
HMGB3O15347 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
HMGB3O15347 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC15.09■□□□□ 0.01
HMGB3O15347 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC15.09■□□□□ 0.01
HMGB3O15347 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
HMGB3O15347 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
HMGB3O15347 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
HMGB3O15347 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB3O15347 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
HMGB3O15347 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC15.08■□□□□ 0.01
HMGB3O15347 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms