Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DRB4X5D2U9 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HLA-DRB4X5D2U9 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HLA-DRB4X5D2U9 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HLA-DRB4X5D2U9 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DRB4X5D2U9 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DRB4X5D2U9 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
HLA-DRB4X5D2U9 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DRB4X5D2U9 ZNRF2P2-203ENST00000454624 420 ntBASIC18.78■□□□□ 0.6
HLA-DRB4X5D2U9 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DRB4X5D2U9 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DRB4X5D2U9 AC110285.7-201ENST00000624417 1536 ntBASIC18.78■□□□□ 0.6
HLA-DRB4X5D2U9 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC18.78■□□□□ 0.6
HLA-DRB4X5D2U9 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DRB4X5D2U9 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DRB4X5D2U9 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HLA-DRB4X5D2U9 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DRB4X5D2U9 ABHD17AP4-201ENST00000411545 909 ntBASIC18.76■□□□□ 0.59
HLA-DRB4X5D2U9 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DRB4X5D2U9 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DRB4X5D2U9 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
HLA-DRB4X5D2U9 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC18.76■□□□□ 0.59
HLA-DRB4X5D2U9 AL121749.1-202ENST00000609313 2153 ntBASIC18.75■□□□□ 0.59
HLA-DRB4X5D2U9 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC18.75■□□□□ 0.59
HLA-DRB4X5D2U9 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DRB4X5D2U9 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DRB4X5D2U9 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DRB4X5D2U9 CHML-204ENST00000638121 920 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DRB4X5D2U9 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DRB4X5D2U9 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DRB4X5D2U9 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DRB4X5D2U9 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DRB4X5D2U9 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HLA-DRB4X5D2U9 BX255925.1-201ENST00000566954 1854 ntBASIC18.74■□□□□ 0.59
HLA-DRB4X5D2U9 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
HLA-DRB4X5D2U9 AC018358.1-201ENST00000631079 1402 ntBASIC18.74■□□□□ 0.59
HLA-DRB4X5D2U9 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 DUX4L13-201ENST00000554103 1267 ntBASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 DUX4L15-201ENST00000611059 1267 ntBASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 DUX4L11-201ENST00000611504 1267 ntBASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 DUX4L12-201ENST00000614593 1267 ntBASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 DUX4L23-201ENST00000615195 1269 ntBASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 DUX4L24-201ENST00000617576 1269 ntBASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 DUX4L22-201ENST00000618238 1269 ntBASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 DUX4L20-201ENST00000619712 1269 ntBASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 DUX4L14-201ENST00000621227 1267 ntBASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 DUX4L21-201ENST00000622058 1269 ntBASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 DUX4L10-201ENST00000622460 1267 ntBASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 DUX4L25-201ENST00000624915 1269 ntBASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DRB4X5D2U9 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DRB4X5D2U9 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DRB4X5D2U9 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DRB4X5D2U9 LINC01003-201ENST00000564834 1764 ntBASIC18.72■□□□□ 0.59
HLA-DRB4X5D2U9 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC18.72■□□□□ 0.59
HLA-DRB4X5D2U9 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DRB4X5D2U9 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DRB4X5D2U9 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
HLA-DRB4X5D2U9 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DRB4X5D2U9 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
HLA-DRB4X5D2U9 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC18.71■□□□□ 0.59
HLA-DRB4X5D2U9 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
HLA-DRB4X5D2U9 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HLA-DRB4X5D2U9 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DRB4X5D2U9 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
HLA-DRB4X5D2U9 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC18.71■□□□□ 0.59
HLA-DRB4X5D2U9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DRB4X5D2U9 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DRB4X5D2U9 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DRB4X5D2U9 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DRB4X5D2U9 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DRB4X5D2U9 PEX7-203ENST00000541292 945 ntTSL 5 BASIC18.7■□□□□ 0.58
HLA-DRB4X5D2U9 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DRB4X5D2U9 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DRB4X5D2U9 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DRB4X5D2U9 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DRB4X5D2U9 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DRB4X5D2U9 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DRB4X5D2U9 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DRB4X5D2U9 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DRB4X5D2U9 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC18.68■□□□□ 0.58
HLA-DRB4X5D2U9 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DRB4X5D2U9 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DRB4X5D2U9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DRB4X5D2U9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC18.67■□□□□ 0.58
HLA-DRB4X5D2U9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC18.67■□□□□ 0.58
HLA-DRB4X5D2U9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC18.67■□□□□ 0.58
HLA-DRB4X5D2U9 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DRB4X5D2U9 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DRB4X5D2U9 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DRB4X5D2U9 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HLA-DRB4X5D2U9 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HLA-DRB4X5D2U9 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC18.65■□□□□ 0.58
HLA-DRB4X5D2U9 RPS2-210ENST00000530225 765 ntTSL 2 BASIC18.65■□□□□ 0.58
HLA-DRB4X5D2U9 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DRB4X5D2U9 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HLA-DRB4X5D2U9 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC18.64■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms