Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
MMP28Q9H239 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.94■■□□□ 1.1
MMP28Q9H239 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.94■■□□□ 1.1
MMP28Q9H239 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
MMP28Q9H239 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
MMP28Q9H239 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
MMP28Q9H239 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
MMP28Q9H239 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC21.93■■□□□ 1.1
MMP28Q9H239 AL391121.1-201ENST00000607967 1349 ntBASIC21.93■■□□□ 1.1
MMP28Q9H239 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MMP28Q9H239 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.92■■□□□ 1.1
MMP28Q9H239 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MMP28Q9H239 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
MMP28Q9H239 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
MMP28Q9H239 AC145676.1-201ENST00000514988 2004 ntBASIC21.92■■□□□ 1.1
MMP28Q9H239 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
MMP28Q9H239 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
MMP28Q9H239 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MMP28Q9H239 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MMP28Q9H239 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.91■■□□□ 1.1
MMP28Q9H239 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.91■■□□□ 1.1
MMP28Q9H239 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MMP28Q9H239 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MMP28Q9H239 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
MMP28Q9H239 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
MMP28Q9H239 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
MMP28Q9H239 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
MMP28Q9H239 CAHM-201ENST00000604200 896 ntBASIC21.9■■□□□ 1.1
MMP28Q9H239 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.9■■□□□ 1.1
MMP28Q9H239 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
MMP28Q9H239 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
MMP28Q9H239 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
MMP28Q9H239 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MMP28Q9H239 SUZ12P1-203ENST00000578195 985 ntBASIC21.89■■□□□ 1.09
MMP28Q9H239 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MMP28Q9H239 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
MMP28Q9H239 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
MMP28Q9H239 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.88■■□□□ 1.09
MMP28Q9H239 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.88■■□□□ 1.09
MMP28Q9H239 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MMP28Q9H239 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MMP28Q9H239 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MMP28Q9H239 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.87■■□□□ 1.09
MMP28Q9H239 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MMP28Q9H239 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MMP28Q9H239 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MMP28Q9H239 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MMP28Q9H239 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.85■■□□□ 1.09
MMP28Q9H239 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MMP28Q9H239 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MMP28Q9H239 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
MMP28Q9H239 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MMP28Q9H239 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MMP28Q9H239 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.84■■□□□ 1.09
MMP28Q9H239 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.84■■□□□ 1.09
MMP28Q9H239 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
MMP28Q9H239 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MMP28Q9H239 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MMP28Q9H239 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MMP28Q9H239 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.83■■□□□ 1.09
MMP28Q9H239 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.83■■□□□ 1.09
MMP28Q9H239 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.83■■□□□ 1.09
MMP28Q9H239 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.83■■□□□ 1.09
MMP28Q9H239 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MMP28Q9H239 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MMP28Q9H239 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MMP28Q9H239 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MMP28Q9H239 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.82■■□□□ 1.08
MMP28Q9H239 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.82■■□□□ 1.08
MMP28Q9H239 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MMP28Q9H239 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.81■■□□□ 1.08
MMP28Q9H239 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MMP28Q9H239 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MMP28Q9H239 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MMP28Q9H239 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MMP28Q9H239 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.8■■□□□ 1.08
MMP28Q9H239 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
MMP28Q9H239 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MMP28Q9H239 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MMP28Q9H239 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MMP28Q9H239 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
MMP28Q9H239 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
MMP28Q9H239 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MMP28Q9H239 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MMP28Q9H239 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MMP28Q9H239 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
MMP28Q9H239 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.78■■□□□ 1.08
MMP28Q9H239 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MMP28Q9H239 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.78■■□□□ 1.08
MMP28Q9H239 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MMP28Q9H239 RPS2P35-201ENST00000443417 897 ntBASIC21.78■■□□□ 1.08
MMP28Q9H239 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
MMP28Q9H239 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
MMP28Q9H239 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MMP28Q9H239 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MMP28Q9H239 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
MMP28Q9H239 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.77■■□□□ 1.08
MMP28Q9H239 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
MMP28Q9H239 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.77■■□□□ 1.08
MMP28Q9H239 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 8.2 ms