Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC20.16■□□□□ 0.82
CLRN3Q8NCR9 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLRN3Q8NCR9 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLRN3Q8NCR9 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CLRN3Q8NCR9 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLRN3Q8NCR9 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLRN3Q8NCR9 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLRN3Q8NCR9 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLRN3Q8NCR9 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLRN3Q8NCR9 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CLRN3Q8NCR9 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLRN3Q8NCR9 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.13■□□□□ 0.81
CLRN3Q8NCR9 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLRN3Q8NCR9 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
CLRN3Q8NCR9 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.13■□□□□ 0.81
CLRN3Q8NCR9 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN3Q8NCR9 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN3Q8NCR9 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN3Q8NCR9 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN3Q8NCR9 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN3Q8NCR9 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN3Q8NCR9 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN3Q8NCR9 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN3Q8NCR9 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.11■□□□□ 0.81
CLRN3Q8NCR9 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN3Q8NCR9 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN3Q8NCR9 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN3Q8NCR9 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.1■□□□□ 0.81
CLRN3Q8NCR9 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CLRN3Q8NCR9 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
CLRN3Q8NCR9 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CLRN3Q8NCR9 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLRN3Q8NCR9 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
CLRN3Q8NCR9 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLRN3Q8NCR9 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLRN3Q8NCR9 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLRN3Q8NCR9 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLRN3Q8NCR9 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLRN3Q8NCR9 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CLRN3Q8NCR9 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CLRN3Q8NCR9 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLRN3Q8NCR9 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLRN3Q8NCR9 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLRN3Q8NCR9 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLRN3Q8NCR9 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.07■□□□□ 0.8
CLRN3Q8NCR9 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.07■□□□□ 0.8
CLRN3Q8NCR9 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLRN3Q8NCR9 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLRN3Q8NCR9 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLRN3Q8NCR9 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLRN3Q8NCR9 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN3Q8NCR9 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN3Q8NCR9 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN3Q8NCR9 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN3Q8NCR9 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN3Q8NCR9 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CLRN3Q8NCR9 AC068473.5-201ENST00000616428 2072 ntBASIC20.04■□□□□ 0.8
CLRN3Q8NCR9 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLRN3Q8NCR9 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLRN3Q8NCR9 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CLRN3Q8NCR9 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CLRN3Q8NCR9 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLRN3Q8NCR9 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.03■□□□□ 0.8
CLRN3Q8NCR9 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CLRN3Q8NCR9 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLRN3Q8NCR9 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CLRN3Q8NCR9 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLRN3Q8NCR9 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLRN3Q8NCR9 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLRN3Q8NCR9 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLRN3Q8NCR9 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLRN3Q8NCR9 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLRN3Q8NCR9 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLRN3Q8NCR9 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLRN3Q8NCR9 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLRN3Q8NCR9 LINC01003-201ENST00000564834 1764 ntBASIC20■□□□□ 0.79
CLRN3Q8NCR9 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLRN3Q8NCR9 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLRN3Q8NCR9 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
CLRN3Q8NCR9 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC20■□□□□ 0.79
CLRN3Q8NCR9 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLRN3Q8NCR9 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLRN3Q8NCR9 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLRN3Q8NCR9 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLRN3Q8NCR9 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLRN3Q8NCR9 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.99■□□□□ 0.79
CLRN3Q8NCR9 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.98■□□□□ 0.79
CLRN3Q8NCR9 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLRN3Q8NCR9 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLRN3Q8NCR9 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CLRN3Q8NCR9 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLRN3Q8NCR9 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLRN3Q8NCR9 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLRN3Q8NCR9 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CLRN3Q8NCR9 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLRN3Q8NCR9 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.96■□□□□ 0.79
CLRN3Q8NCR9 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLRN3Q8NCR9 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLRN3Q8NCR9 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLRN3Q8NCR9 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms