Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.52■■□□□ 1.2
SSX4O60224 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
SSX4O60224 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SSX4O60224 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SSX4O60224 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
SSX4O60224 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SSX4O60224 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
SSX4O60224 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SSX4O60224 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SSX4O60224 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.5■■□□□ 1.19
SSX4O60224 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
SSX4O60224 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC22.5■■□□□ 1.19
SSX4O60224 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SSX4O60224 RNF166-209ENST00000567844 633 ntTSL 5 BASIC22.5■■□□□ 1.19
SSX4O60224 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SSX4O60224 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SSX4O60224 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SSX4O60224 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
SSX4O60224 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC22.49■■□□□ 1.19
SSX4O60224 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SSX4O60224 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SSX4O60224 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SSX4O60224 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
SSX4O60224 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SSX4O60224 MACF1-219ENST00000484793 834 ntTSL 2 BASIC22.47■■□□□ 1.19
SSX4O60224 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SSX4O60224 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
SSX4O60224 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SSX4O60224 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.46■■□□□ 1.19
SSX4O60224 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
SSX4O60224 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SSX4O60224 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC22.46■■□□□ 1.19
SSX4O60224 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.46■■□□□ 1.19
SSX4O60224 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
SSX4O60224 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SSX4O60224 MIR639-201ENST00000384974 98 ntBASIC22.45■■□□□ 1.18
SSX4O60224 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC22.45■■□□□ 1.18
SSX4O60224 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.45■■□□□ 1.18
SSX4O60224 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
SSX4O60224 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SSX4O60224 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.44■■□□□ 1.18
SSX4O60224 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC22.44■■□□□ 1.18
SSX4O60224 BX255925.1-201ENST00000566954 1854 ntBASIC22.44■■□□□ 1.18
SSX4O60224 AC016575.1-201ENST00000607026 382 ntBASIC22.44■■□□□ 1.18
SSX4O60224 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SSX4O60224 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
SSX4O60224 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.44■■□□□ 1.18
SSX4O60224 GDI1-215ENST00000630693 786 ntTSL 4 BASIC22.44■■□□□ 1.18
SSX4O60224 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
SSX4O60224 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC22.43■■□□□ 1.18
SSX4O60224 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SSX4O60224 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SSX4O60224 MIR4449-201ENST00000578365 66 ntBASIC22.43■■□□□ 1.18
SSX4O60224 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC22.43■■□□□ 1.18
SSX4O60224 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SSX4O60224 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SSX4O60224 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC22.42■■□□□ 1.18
SSX4O60224 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
SSX4O60224 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC22.42■■□□□ 1.18
SSX4O60224 MIR3648-2-201ENST00000581792 180 ntBASIC22.42■■□□□ 1.18
SSX4O60224 DUX4L11-201ENST00000611504 1267 ntBASIC22.42■■□□□ 1.18
SSX4O60224 DUX4L12-201ENST00000614593 1267 ntBASIC22.42■■□□□ 1.18
SSX4O60224 MIR3648-1-201ENST00000615959 180 ntBASIC22.42■■□□□ 1.18
SSX4O60224 DUX4L14-201ENST00000621227 1267 ntBASIC22.42■■□□□ 1.18
SSX4O60224 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SSX4O60224 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SSX4O60224 LINC01971-201ENST00000617888 1048 ntBASIC22.41■■□□□ 1.18
SSX4O60224 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.41■■□□□ 1.18
SSX4O60224 AC093323.1-202ENST00000635031 2045 ntBASIC22.41■■□□□ 1.18
SSX4O60224 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
SSX4O60224 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC22.41■■□□□ 1.18
SSX4O60224 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SSX4O60224 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.4■■□□□ 1.18
SSX4O60224 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC22.4■■□□□ 1.18
SSX4O60224 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SSX4O60224 AC020928.2-201ENST00000588717 2197 ntBASIC22.39■■□□□ 1.18
SSX4O60224 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.39■■□□□ 1.17
SSX4O60224 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SSX4O60224 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC22.38■■□□□ 1.17
SSX4O60224 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SSX4O60224 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.38■■□□□ 1.17
SSX4O60224 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SSX4O60224 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
SSX4O60224 AGPS-202ENST00000409888 815 ntTSL 4 BASIC22.37■■□□□ 1.17
SSX4O60224 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
SSX4O60224 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.37■■□□□ 1.17
SSX4O60224 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC22.37■■□□□ 1.17
SSX4O60224 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
SSX4O60224 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
SSX4O60224 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC22.37■■□□□ 1.17
SSX4O60224 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SSX4O60224 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC22.37■■□□□ 1.17
SSX4O60224 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SSX4O60224 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SSX4O60224 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SSX4O60224 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
SSX4O60224 CALM3-209ENST00000597743 577 ntTSL 4 BASIC22.36■■□□□ 1.17
SSX4O60224 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
SSX4O60224 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SSX4O60224 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.35■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms