Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.49■■□□□ 1.51
UBFD1O14562 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
UBFD1O14562 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
UBFD1O14562 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
UBFD1O14562 NRG1-221ENST00000614767 762 ntTSL 5 BASIC24.48■■□□□ 1.51
UBFD1O14562 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
UBFD1O14562 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
UBFD1O14562 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
UBFD1O14562 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
UBFD1O14562 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
UBFD1O14562 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
UBFD1O14562 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
UBFD1O14562 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.45■■□□□ 1.5
UBFD1O14562 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC24.45■■□□□ 1.5
UBFD1O14562 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.45■■□□□ 1.5
UBFD1O14562 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
UBFD1O14562 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
UBFD1O14562 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC24.45■■□□□ 1.5
UBFD1O14562 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
UBFD1O14562 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC24.44■■□□□ 1.5
UBFD1O14562 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
UBFD1O14562 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
UBFD1O14562 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
UBFD1O14562 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24.43■■□□□ 1.5
UBFD1O14562 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
UBFD1O14562 AC087741.3-201ENST00000624270 1347 ntBASIC24.43■■□□□ 1.5
UBFD1O14562 AP006261.1-201ENST00000584783 668 ntBASIC24.43■■□□□ 1.5
UBFD1O14562 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
UBFD1O14562 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
UBFD1O14562 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
UBFD1O14562 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
UBFD1O14562 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
UBFD1O14562 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC24.41■■□□□ 1.5
UBFD1O14562 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC24.41■■□□□ 1.5
UBFD1O14562 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.41■■□□□ 1.5
UBFD1O14562 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
UBFD1O14562 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
UBFD1O14562 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
UBFD1O14562 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
UBFD1O14562 AL449106.1-201ENST00000608517 1980 ntBASIC24.4■■□□□ 1.5
UBFD1O14562 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
UBFD1O14562 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.39■■□□□ 1.5
UBFD1O14562 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.39■■□□□ 1.49
UBFD1O14562 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC24.38■■□□□ 1.49
UBFD1O14562 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
UBFD1O14562 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
UBFD1O14562 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.38■■□□□ 1.49
UBFD1O14562 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.38■■□□□ 1.49
UBFD1O14562 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
UBFD1O14562 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
UBFD1O14562 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC24.37■■□□□ 1.49
UBFD1O14562 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.37■■□□□ 1.49
UBFD1O14562 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
UBFD1O14562 AC091060.1-201ENST00000623524 1766 ntBASIC24.37■■□□□ 1.49
UBFD1O14562 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
UBFD1O14562 AL162393.1-201ENST00000437852 946 ntBASIC24.36■■□□□ 1.49
UBFD1O14562 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
UBFD1O14562 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC24.34■■□□□ 1.49
UBFD1O14562 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC24.34■■□□□ 1.49
UBFD1O14562 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
UBFD1O14562 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
UBFD1O14562 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.34■■□□□ 1.49
UBFD1O14562 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
UBFD1O14562 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC24.33■■□□□ 1.49
UBFD1O14562 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.33■■□□□ 1.49
UBFD1O14562 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
UBFD1O14562 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
UBFD1O14562 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
UBFD1O14562 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24.32■■□□□ 1.48
UBFD1O14562 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
UBFD1O14562 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
UBFD1O14562 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
UBFD1O14562 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC24.31■■□□□ 1.48
UBFD1O14562 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UBFD1O14562 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.31■■□□□ 1.48
UBFD1O14562 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC24.3■■□□□ 1.48
UBFD1O14562 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
UBFD1O14562 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
UBFD1O14562 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
UBFD1O14562 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
UBFD1O14562 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
UBFD1O14562 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
UBFD1O14562 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
UBFD1O14562 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.29■■□□□ 1.48
UBFD1O14562 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
UBFD1O14562 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
UBFD1O14562 AC110285.7-201ENST00000624417 1536 ntBASIC24.27■■□□□ 1.48
UBFD1O14562 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
UBFD1O14562 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.27■■□□□ 1.48
UBFD1O14562 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
UBFD1O14562 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
UBFD1O14562 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
UBFD1O14562 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
UBFD1O14562 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC24.26■■□□□ 1.47
UBFD1O14562 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
UBFD1O14562 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
UBFD1O14562 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.25■■□□□ 1.47
UBFD1O14562 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.25■■□□□ 1.47
UBFD1O14562 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC24.25■■□□□ 1.47
UBFD1O14562 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms