Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV39A0A0B4J263 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.01■□□□□ 0.95
TRAV39A0A0B4J263 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV39A0A0B4J263 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV39A0A0B4J263 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
TRAV39A0A0B4J263 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV39A0A0B4J263 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.01■□□□□ 0.95
TRAV39A0A0B4J263 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV39A0A0B4J263 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRAV39A0A0B4J263 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
TRAV39A0A0B4J263 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV39A0A0B4J263 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21■□□□□ 0.95
TRAV39A0A0B4J263 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21■□□□□ 0.95
TRAV39A0A0B4J263 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21■□□□□ 0.95
TRAV39A0A0B4J263 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV39A0A0B4J263 DUX4L29-201ENST00000425409 679 ntBASIC20.99■□□□□ 0.95
TRAV39A0A0B4J263 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.99■□□□□ 0.95
TRAV39A0A0B4J263 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV39A0A0B4J263 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV39A0A0B4J263 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.97■□□□□ 0.95
TRAV39A0A0B4J263 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV39A0A0B4J263 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.97■□□□□ 0.95
TRAV39A0A0B4J263 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC20.97■□□□□ 0.95
TRAV39A0A0B4J263 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
TRAV39A0A0B4J263 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV39A0A0B4J263 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TRAV39A0A0B4J263 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.96■□□□□ 0.95
TRAV39A0A0B4J263 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV39A0A0B4J263 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV39A0A0B4J263 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.96■□□□□ 0.95
TRAV39A0A0B4J263 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.96■□□□□ 0.95
TRAV39A0A0B4J263 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.96■□□□□ 0.95
TRAV39A0A0B4J263 AC018358.1-201ENST00000631079 1402 ntBASIC20.95■□□□□ 0.95
TRAV39A0A0B4J263 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
TRAV39A0A0B4J263 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV39A0A0B4J263 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.94■□□□□ 0.94
TRAV39A0A0B4J263 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.94■□□□□ 0.94
TRAV39A0A0B4J263 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV39A0A0B4J263 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.93■□□□□ 0.94
TRAV39A0A0B4J263 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV39A0A0B4J263 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
TRAV39A0A0B4J263 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV39A0A0B4J263 AC110285.7-201ENST00000624417 1536 ntBASIC20.93■□□□□ 0.94
TRAV39A0A0B4J263 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
TRAV39A0A0B4J263 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV39A0A0B4J263 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV39A0A0B4J263 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV39A0A0B4J263 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAV39A0A0B4J263 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAV39A0A0B4J263 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAV39A0A0B4J263 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAV39A0A0B4J263 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TRAV39A0A0B4J263 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.89■□□□□ 0.94
TRAV39A0A0B4J263 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
TRAV39A0A0B4J263 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.89■□□□□ 0.93
TRAV39A0A0B4J263 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
TRAV39A0A0B4J263 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRAV39A0A0B4J263 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV39A0A0B4J263 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV39A0A0B4J263 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV39A0A0B4J263 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV39A0A0B4J263 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV39A0A0B4J263 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV39A0A0B4J263 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV39A0A0B4J263 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
TRAV39A0A0B4J263 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.87■□□□□ 0.93
TRAV39A0A0B4J263 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
TRAV39A0A0B4J263 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV39A0A0B4J263 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
TRAV39A0A0B4J263 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV39A0A0B4J263 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV39A0A0B4J263 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.86■□□□□ 0.93
TRAV39A0A0B4J263 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
TRAV39A0A0B4J263 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.85■□□□□ 0.93
TRAV39A0A0B4J263 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
TRAV39A0A0B4J263 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.85■□□□□ 0.93
TRAV39A0A0B4J263 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.85■□□□□ 0.93
TRAV39A0A0B4J263 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
TRAV39A0A0B4J263 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
TRAV39A0A0B4J263 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
TRAV39A0A0B4J263 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRAV39A0A0B4J263 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRAV39A0A0B4J263 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAV39A0A0B4J263 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.84■□□□□ 0.93
TRAV39A0A0B4J263 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV39A0A0B4J263 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.84■□□□□ 0.93
TRAV39A0A0B4J263 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.84■□□□□ 0.93
TRAV39A0A0B4J263 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.84■□□□□ 0.93
TRAV39A0A0B4J263 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.84■□□□□ 0.93
TRAV39A0A0B4J263 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.84■□□□□ 0.93
TRAV39A0A0B4J263 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRAV39A0A0B4J263 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRAV39A0A0B4J263 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.83■□□□□ 0.93
TRAV39A0A0B4J263 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRAV39A0A0B4J263 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRAV39A0A0B4J263 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.83■□□□□ 0.92
TRAV39A0A0B4J263 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRAV39A0A0B4J263 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRAV39A0A0B4J263 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV39A0A0B4J263 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms