Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 NRG1-221ENST00000614767 762 ntTSL 5 BASIC20.25■□□□□ 0.83
TRAV3A0A0B4J244 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.25■□□□□ 0.83
TRAV3A0A0B4J244 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV3A0A0B4J244 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV3A0A0B4J244 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
TRAV3A0A0B4J244 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.23■□□□□ 0.83
TRAV3A0A0B4J244 AP006261.1-201ENST00000584783 668 ntBASIC20.23■□□□□ 0.83
TRAV3A0A0B4J244 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV3A0A0B4J244 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
TRAV3A0A0B4J244 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV3A0A0B4J244 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAV3A0A0B4J244 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.22■□□□□ 0.83
TRAV3A0A0B4J244 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAV3A0A0B4J244 AC087741.3-201ENST00000624270 1347 ntBASIC20.22■□□□□ 0.83
TRAV3A0A0B4J244 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
TRAV3A0A0B4J244 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV3A0A0B4J244 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TRAV3A0A0B4J244 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV3A0A0B4J244 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.21■□□□□ 0.83
TRAV3A0A0B4J244 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAV3A0A0B4J244 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV3A0A0B4J244 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
TRAV3A0A0B4J244 CALM3-209ENST00000597743 577 ntTSL 4 BASIC20.2■□□□□ 0.82
TRAV3A0A0B4J244 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV3A0A0B4J244 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV3A0A0B4J244 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC20.2■□□□□ 0.82
TRAV3A0A0B4J244 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
TRAV3A0A0B4J244 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV3A0A0B4J244 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV3A0A0B4J244 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV3A0A0B4J244 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
TRAV3A0A0B4J244 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV3A0A0B4J244 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV3A0A0B4J244 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV3A0A0B4J244 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.18■□□□□ 0.82
TRAV3A0A0B4J244 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
TRAV3A0A0B4J244 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV3A0A0B4J244 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV3A0A0B4J244 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.17■□□□□ 0.82
TRAV3A0A0B4J244 AL162393.1-201ENST00000437852 946 ntBASIC20.17■□□□□ 0.82
TRAV3A0A0B4J244 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV3A0A0B4J244 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.16■□□□□ 0.82
TRAV3A0A0B4J244 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV3A0A0B4J244 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV3A0A0B4J244 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV3A0A0B4J244 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
TRAV3A0A0B4J244 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV3A0A0B4J244 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV3A0A0B4J244 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.15■□□□□ 0.82
TRAV3A0A0B4J244 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.15■□□□□ 0.82
TRAV3A0A0B4J244 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV3A0A0B4J244 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV3A0A0B4J244 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV3A0A0B4J244 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV3A0A0B4J244 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV3A0A0B4J244 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
TRAV3A0A0B4J244 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV3A0A0B4J244 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
TRAV3A0A0B4J244 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV3A0A0B4J244 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV3A0A0B4J244 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
TRAV3A0A0B4J244 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC20.12■□□□□ 0.81
TRAV3A0A0B4J244 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC20.12■□□□□ 0.81
TRAV3A0A0B4J244 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
TRAV3A0A0B4J244 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV3A0A0B4J244 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC20.12■□□□□ 0.81
TRAV3A0A0B4J244 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.12■□□□□ 0.81
TRAV3A0A0B4J244 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.12■□□□□ 0.81
TRAV3A0A0B4J244 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.12■□□□□ 0.81
TRAV3A0A0B4J244 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.12■□□□□ 0.81
TRAV3A0A0B4J244 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV3A0A0B4J244 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
TRAV3A0A0B4J244 AL449106.1-201ENST00000608517 1980 ntBASIC20.1■□□□□ 0.81
TRAV3A0A0B4J244 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
TRAV3A0A0B4J244 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.1■□□□□ 0.81
TRAV3A0A0B4J244 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV3A0A0B4J244 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
TRAV3A0A0B4J244 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC20.1■□□□□ 0.81
TRAV3A0A0B4J244 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
TRAV3A0A0B4J244 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV3A0A0B4J244 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
TRAV3A0A0B4J244 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
TRAV3A0A0B4J244 AC044849.2-201ENST00000606596 710 ntBASIC20.09■□□□□ 0.81
TRAV3A0A0B4J244 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
TRAV3A0A0B4J244 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV3A0A0B4J244 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRAV3A0A0B4J244 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRAV3A0A0B4J244 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.08■□□□□ 0.81
TRAV3A0A0B4J244 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
TRAV3A0A0B4J244 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV3A0A0B4J244 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.07■□□□□ 0.8
TRAV3A0A0B4J244 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV3A0A0B4J244 AC091060.1-201ENST00000623524 1766 ntBASIC20.07■□□□□ 0.8
TRAV3A0A0B4J244 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV3A0A0B4J244 AC110285.7-201ENST00000624417 1536 ntBASIC20.07■□□□□ 0.8
TRAV3A0A0B4J244 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.06■□□□□ 0.8
TRAV3A0A0B4J244 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
TRAV3A0A0B4J244 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV3A0A0B4J244 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.04■□□□□ 0.8
TRAV3A0A0B4J244 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms