RNA–Protein interactions for RNA: YGR009C

SEC9, Transcript of t-SNARE protein required for secretory vesicle-plasma membrane fusion, yeastyeast

Gene SEC9, Length 1,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC9YGR009C RQC2Q12532 1038 aaKnown RBP8.59□□□□□ -1.03
SEC9YGR009C MTC1P47018 478 aaKnown RBP8.15□□□□□ -1.1
SEC9YGR009C TAF7Q05021 590 aa8.03□□□□□ -1.12
SEC9YGR009C BFR2Q06631 534 aaKnown RBP7.89□□□□□ -1.15
SEC9YGR009C TFA1P36100 482 aa7.83□□□□□ -1.16
SEC9YGR009C DRS1P32892 752 aaKnown RBP7.82□□□□□ -1.16
SEC9YGR009C FAP1P53971 965 aa7.5□□□□□ -1.21
SEC9YGR009C URN1Q06525 465 aaKnown RBP7.42□□□□□ -1.22
SEC9YGR009C LEO1P38439 464 aa7.07□□□□□ -1.28
SEC9YGR009C PRY3P47033 881 aa7.03□□□□□ -1.28
SEC9YGR009C NAP1P25293 417 aaKnown RBP7□□□□□ -1.29
SEC9YGR009C SIS2P36024 562 aa6.97□□□□□ -1.29
SEC9YGR009C YRB30P53107 440 aaPredicted RBP6.95□□□□□ -1.3
SEC9YGR009C PRI1P10363 409 aa6.93□□□□□ -1.3
SEC9YGR009C DMA1P38823 416 aa6.91□□□□□ -1.3
SEC9YGR009C AAD16Q02895 342 aa6.91□□□□□ -1.3
SEC9YGR009C IOC4Q04213 475 aa6.91□□□□□ -1.3
SEC9YGR009C YFR016CP43597 1233 aaKnown RBP6.87□□□□□ -1.31
SEC9YGR009C AIM44Q99299 758 aa6.85□□□□□ -1.31
SEC9YGR009C EBP2P36049 427 aaKnown RBP6.84□□□□□ -1.31
SEC9YGR009C CAB3P36076 571 aa6.82□□□□□ -1.32
SEC9YGR009C ISW2Q08773 1120 aa6.81□□□□□ -1.32
SEC9YGR009C DIP2Q12220 943 aaPredicted RBP6.76□□□□□ -1.33
SEC9YGR009C KRI1P42846 591 aaKnown RBP6.74□□□□□ -1.33
SEC9YGR009C RPS0BP46654 252 aaKnown RBP6.73□□□□□ -1.33
SEC9YGR009C IFH1P39520 1085 aa6.72□□□□□ -1.33
SEC9YGR009C RPG1P38249 964 aaKnown RBP6.71□□□□□ -1.33
SEC9YGR009C AVT3P36062 692 aa6.7□□□□□ -1.34
SEC9YGR009C TOP1P04786 769 aa6.64□□□□□ -1.35
SEC9YGR009C MNN4P36044 1178 aa6.64□□□□□ -1.35
SEC9YGR009C SNU71P53207 620 aaKnown RBP6.63□□□□□ -1.35
SEC9YGR009C ORC1P54784 914 aaPredicted RBP6.62□□□□□ -1.35
SEC9YGR009C HAA1Q12753 694 aaKnown RBP6.59□□□□□ -1.35
SEC9YGR009C YCK3P39962 524 aa6.55□□□□□ -1.36
SEC9YGR009C TSR3Q12094 313 aaKnown RBP6.55□□□□□ -1.36
SEC9YGR009C NOP2P40991 618 aaKnown RBP6.5□□□□□ -1.37
SEC9YGR009C CWC22P53333 577 aaKnown RBP6.49□□□□□ -1.37
SEC9YGR009C LEU3P08638 886 aa6.48□□□□□ -1.37
SEC9YGR009C RSE1Q04693 1361 aaKnown RBP6.45□□□□□ -1.38
SEC9YGR009C MDG1P53885 366 aa6.43□□□□□ -1.38
SEC9YGR009C RLP24Q07915 199 aaKnown RBP6.4□□□□□ -1.38
SEC9YGR009C PSH1Q12161 406 aa6.4□□□□□ -1.38
SEC9YGR009C ABP1P15891 592 aaKnown RBP6.4□□□□□ -1.39
SEC9YGR009C DEF1P35732 738 aaKnown RBP6.4□□□□□ -1.39
SEC9YGR009C DMA2P53924 522 aa6.4□□□□□ -1.39
SEC9YGR009C GIN4Q12263 1142 aa6.37□□□□□ -1.39
SEC9YGR009C RLF2Q12495 606 aa6.37□□□□□ -1.39
SEC9YGR009C SWE1P32944 819 aa6.35□□□□□ -1.39
SEC9YGR009C BRL1P38770 471 aa6.33□□□□□ -1.4
SEC9YGR009C MRPL32P25348 183 aa6.31□□□□□ -1.4
SEC9YGR009C TOA1P32773 286 aa6.31□□□□□ -1.4
SEC9YGR009C NUG1P40010 520 aaKnown RBP6.29□□□□□ -1.4
SEC9YGR009C HIF1Q12373 385 aa6.29□□□□□ -1.4
SEC9YGR009C RPN1P38764 993 aaKnown RBP6.28□□□□□ -1.4
SEC9YGR009C SUB1P54000 292 aaKnown RBP6.27□□□□□ -1.4
SEC9YGR009C VPS72Q03388 795 aa6.27□□□□□ -1.41
SEC9YGR009C ATG36P46983 293 aa6.26□□□□□ -1.41
SEC9YGR009C REB1P21538 810 aa6.25□□□□□ -1.41
SEC9YGR009C ASF1P32447 279 aa6.24□□□□□ -1.41
SEC9YGR009C RPL17AP05740 184 aaKnown RBP6.24□□□□□ -1.41
SEC9YGR009C RPL17BP46990 184 aaKnown RBP6.24□□□□□ -1.41
SEC9YGR009C RPS0AP32905 252 aaKnown RBP6.22□□□□□ -1.41
SEC9YGR009C ENV11P53246 860 aa6.22□□□□□ -1.41
SEC9YGR009C TPO2P53283 614 aa6.22□□□□□ -1.41
SEC9YGR009C SAS10Q12136 610 aaPredicted RBP6.2□□□□□ -1.42
SEC9YGR009C FPR3P38911 411 aaKnown RBP6.2□□□□□ -1.42
SEC9YGR009C YPR148CQ06523 435 aa6.19□□□□□ -1.42
SEC9YGR009C SPT2P06843 333 aaPredicted RBP6.18□□□□□ -1.42
SEC9YGR009C OSW7P43611 510 aa6.18□□□□□ -1.42
SEC9YGR009C NHA1Q99271 985 aa6.18□□□□□ -1.42
SEC9YGR009C SSA1P10591 642 aaKnown RBP6.17□□□□□ -1.42
SEC9YGR009C SSA2P10592 639 aaKnown RBP6.17□□□□□ -1.42
SEC9YGR009C HSP82P02829 709 aaKnown RBP6.16□□□□□ -1.42
SEC9YGR009C BRN1P38170 754 aa6.16□□□□□ -1.42
SEC9YGR009C NOP8Q08287 484 aaPredicted RBP6.16□□□□□ -1.42
SEC9YGR009C YML020WQ03722 664 aa6.15□□□□□ -1.42
SEC9YGR009C LAM6Q08001 693 aa6.15□□□□□ -1.42
SEC9YGR009C PLP2Q12017 286 aa6.15□□□□□ -1.42
SEC9YGR009C RTS3P53289 263 aa6.15□□□□□ -1.43
SEC9YGR009C TLG1Q03322 224 aa6.13□□□□□ -1.43
SEC9YGR009C ISW1P38144 1129 aa6.12□□□□□ -1.43
SEC9YGR009C TIF4632P39936 914 aaKnown RBP6.12□□□□□ -1.43
SEC9YGR009C SPT16P32558 1035 aaKnown RBP6.11□□□□□ -1.43
SEC9YGR009C MPP10P47083 593 aaKnown RBP6.11□□□□□ -1.43
SEC9YGR009C FAR11P53917 953 aa6.11□□□□□ -1.43
SEC9YGR009C JSN1P47135 1091 aaKnown RBP RIP-Chip data6.11□□□□□ -1.43not detected
SEC9YGR009C RNA1P11745 407 aaKnown RBP6.1□□□□□ -1.43
SEC9YGR009C NAB3P38996 802 aaKnown RBP RIP-Chip data6.1□□□□□ -1.43not detected
SEC9YGR009C QCR6P00127 147 aa6.08□□□□□ -1.44
SEC9YGR009C YGL015CP33199 130 aa6.08□□□□□ -1.44
SEC9YGR009C SSP1P38871 571 aa6.08□□□□□ -1.44
SEC9YGR009C NOP7P53261 605 aaKnown RBP6.08□□□□□ -1.44
SEC9YGR009C BUD21Q08492 214 aaPredicted RBP6.08□□□□□ -1.44
SEC9YGR009C ENP1P38333 483 aaKnown RBP6.07□□□□□ -1.44
SEC9YGR009C KIP3P53086 805 aaKnown RBP6.07□□□□□ -1.44
SEC9YGR009C DOS2P54858 310 aa6.07□□□□□ -1.44
SEC9YGR009C NOP53Q12080 455 aaKnown RBP6.07□□□□□ -1.44
SEC9YGR009C GEF1P37020 779 aa6.06□□□□□ -1.44
SEC9YGR009C YTA7P40340 1379 aa6.05□□□□□ -1.44
SEC9YGR009C PDR1P12383 1068 aa6.04□□□□□ -1.44
Retrieved 100 of 5,963 RNA–protein pairs in 34.5 ms