RNA–Protein interactions for RNA: YFL002C

SPB4, Transcript of Putative ATP-dependent RNA helicase, yeastyeast

Gene SPB4, Length 1,821 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPB4YFL002C MTC1P47018 478 aaKnown RBP10.7□□□□□ -0.7
SPB4YFL002C FAP1P53971 965 aa10.39□□□□□ -0.75
SPB4YFL002C DRS1P32892 752 aaKnown RBP10.29□□□□□ -0.76
SPB4YFL002C PRY3P47033 881 aa9.77□□□□□ -0.84
SPB4YFL002C AAD16Q02895 342 aa9.37□□□□□ -0.91
SPB4YFL002C PRI1P10363 409 aa9.34□□□□□ -0.91
SPB4YFL002C BFR2Q06631 534 aaKnown RBP9.19□□□□□ -0.94
SPB4YFL002C TFA1P36100 482 aa9.14□□□□□ -0.95
SPB4YFL002C YCK3P39962 524 aa9.1□□□□□ -0.95
SPB4YFL002C HAA1Q12753 694 aaKnown RBP9.07□□□□□ -0.96
SPB4YFL002C ISW2Q08773 1120 aa9.02□□□□□ -0.97
SPB4YFL002C RPG1P38249 964 aaKnown RBP8.95□□□□□ -0.98
SPB4YFL002C TSR3Q12094 313 aaKnown RBP8.85□□□□□ -0.99
SPB4YFL002C AVT3P36062 692 aa8.63□□□□□ -1.03
SPB4YFL002C DIP2Q12220 943 aaPredicted RBP8.55□□□□□ -1.04
SPB4YFL002C MRPL32P25348 183 aa8.5□□□□□ -1.05
SPB4YFL002C RQC2Q12532 1038 aaKnown RBP8.45□□□□□ -1.06
SPB4YFL002C RSE1Q04693 1361 aaKnown RBP8.36□□□□□ -1.07
SPB4YFL002C YGL015CP33199 130 aa8.28□□□□□ -1.08
SPB4YFL002C REB1P21538 810 aa8.19□□□□□ -1.1
SPB4YFL002C RPL17AP05740 184 aaKnown RBP8.16□□□□□ -1.1
SPB4YFL002C RPL17BP46990 184 aaKnown RBP8.16□□□□□ -1.1
SPB4YFL002C CDC27P38042 758 aa7.94□□□□□ -1.14
SPB4YFL002C BUD31P25337 157 aaPredicted RBP7.82□□□□□ -1.16
SPB4YFL002C MAP2P38174 421 aaKnown RBP7.78□□□□□ -1.16
SPB4YFL002C DMA1P38823 416 aa7.77□□□□□ -1.17
SPB4YFL002C YKR023WP36119 530 aaKnown RBP7.76□□□□□ -1.17
SPB4YFL002C UBP10P53874 792 aaPredicted RBP7.76□□□□□ -1.17
SPB4YFL002C TAF7Q05021 590 aa7.75□□□□□ -1.17
SPB4YFL002C SPT21P35209 758 aa7.68□□□□□ -1.18
SPB4YFL002C HOP09932 586 aa7.66□□□□□ -1.18
SPB4YFL002C DCD1P06773 312 aa7.65□□□□□ -1.18
SPB4YFL002C TFC8Q12308 588 aa7.61□□□□□ -1.19
SPB4YFL002C SCY1P53009 804 aa7.53□□□□□ -1.2
SPB4YFL002C PTP3P40048 928 aa7.51□□□□□ -1.21
SPB4YFL002C TIF4632P39936 914 aaKnown RBP7.5□□□□□ -1.21
SPB4YFL002C LEO1P38439 464 aa7.47□□□□□ -1.21
SPB4YFL002C SIS1P25294 352 aaKnown RBP7.46□□□□□ -1.21
SPB4YFL002C SLX5P32828 619 aaKnown RBP7.45□□□□□ -1.22
SPB4YFL002C TGL3P40308 642 aa7.43□□□□□ -1.22
SPB4YFL002C UBP9P39967 754 aa7.41□□□□□ -1.22
SPB4YFL002C RIM101P33400 625 aa7.38□□□□□ -1.23
SPB4YFL002C BCH2P36122 765 aa7.34□□□□□ -1.23
SPB4YFL002C SSP1P38871 571 aa7.34□□□□□ -1.23
SPB4YFL002C LEU3P08638 886 aa7.18□□□□□ -1.26
SPB4YFL002C OXP1P28273 1286 aa7.17□□□□□ -1.26
SPB4YFL002C SAS10Q12136 610 aaPredicted RBP7.17□□□□□ -1.26
SPB4YFL002C ARP8Q12386 881 aaKnown RBP RIP-Chip data7.15□□□□□ -1.26not detected
SPB4YFL002C EPS1P40557 701 aa7.13□□□□□ -1.27
SPB4YFL002C YAH1Q12184 172 aaKnown RBP7.12□□□□□ -1.27
SPB4YFL002C BDF1P35817 686 aa7.11□□□□□ -1.27
SPB4YFL002C YLR271WQ06152 274 aa7.08□□□□□ -1.28
SPB4YFL002C YBL029C-AQ3E756 94 aa7.08□□□□□ -1.28
SPB4YFL002C YIL055CP40523 627 aaKnown RBP7.06□□□□□ -1.28
SPB4YFL002C MGA2P40578 1113 aa7.02□□□□□ -1.29
SPB4YFL002C YOR238WQ08634 303 aa7.02□□□□□ -1.29
SPB4YFL002C MST1P07236 462 aa7.01□□□□□ -1.29
SPB4YFL002C RSM7P47150 247 aa6.95□□□□□ -1.3
SPB4YFL002C VNX1P42839 908 aa6.94□□□□□ -1.3
SPB4YFL002C RPN1P38764 993 aaKnown RBP6.94□□□□□ -1.3
SPB4YFL002C BBC1P47068 1157 aa6.92□□□□□ -1.3
SPB4YFL002C WSC3Q12215 556 aa6.92□□□□□ -1.3
SPB4YFL002C SPP1Q03012 353 aa6.91□□□□□ -1.3
SPB4YFL002C DMA2P53924 522 aa6.9□□□□□ -1.31
SPB4YFL002C CST9Q06032 482 aa6.9□□□□□ -1.31
SPB4YFL002C YAP5P40574 245 aa6.89□□□□□ -1.31
SPB4YFL002C NSR1P27476 414 aaKnown RBP RIP-Chip data6.88□□□□□ -1.31not detected
SPB4YFL002C AI2P03876 854 aa6.85□□□□□ -1.31
SPB4YFL002C PSD2P53037 1138 aaKnown RBP6.82□□□□□ -1.32
SPB4YFL002C YJL171CP46992 396 aa6.81□□□□□ -1.32
SPB4YFL002C GTT3P39996 337 aa6.8□□□□□ -1.32
SPB4YFL002C SPB4P25808 606 aaPredicted RBP6.78□□□□□ -1.32
SPB4YFL002C CKB1P43639 278 aa6.78□□□□□ -1.32
SPB4YFL002C TIF11P38912 153 aaKnown RBP6.77□□□□□ -1.33
SPB4YFL002C AIR2Q12476 344 aaKnown RBP6.77□□□□□ -1.33
SPB4YFL002C SET1P38827 1080 aaKnown RBP6.75□□□□□ -1.33
SPB4YFL002C RLF2Q12495 606 aa6.75□□□□□ -1.33
SPB4YFL002C FKH1P40466 484 aa6.74□□□□□ -1.33
SPB4YFL002C YPR148CQ06523 435 aa6.74□□□□□ -1.33
SPB4YFL002C RAM2P29703 316 aa6.73□□□□□ -1.33
SPB4YFL002C ABP1P15891 592 aaKnown RBP6.71□□□□□ -1.33
SPB4YFL002C VPS70P47161 811 aa6.71□□□□□ -1.33
SPB4YFL002C PIB1Q06651 286 aa6.71□□□□□ -1.33
SPB4YFL002C IFH1P39520 1085 aa6.7□□□□□ -1.34
SPB4YFL002C LDB19Q12502 818 aa6.69□□□□□ -1.34
SPB4YFL002C ULI1P43604 169 aa6.68□□□□□ -1.34
SPB4YFL002C BMT6Q12291 365 aa6.64□□□□□ -1.35
SPB4YFL002C DSF2P38213 736 aa6.63□□□□□ -1.35
SPB4YFL002C IOC2Q12072 812 aa6.62□□□□□ -1.35
SPB4YFL002C RCR1P38212 213 aa6.6□□□□□ -1.35
SPB4YFL002C MRM1P25270 412 aa6.6□□□□□ -1.35
SPB4YFL002C YNR021WP53723 404 aaKnown RBP6.6□□□□□ -1.35
SPB4YFL002C PBS2P08018 668 aa6.59□□□□□ -1.35
SPB4YFL002C KIN1P13185 1064 aa6.59□□□□□ -1.35
SPB4YFL002C MAK11P20484 414 aaKnown RBP6.58□□□□□ -1.36
SPB4YFL002C RTG3P38165 486 aa6.57□□□□□ -1.36
SPB4YFL002C HGH1P48362 394 aaKnown RBP6.55□□□□□ -1.36
SPB4YFL002C EAP1P36041 632 aaKnown RBP6.54□□□□□ -1.36
SPB4YFL002C MSB4Q12317 492 aa6.54□□□□□ -1.36
SPB4YFL002C SET4P42948 560 aa6.53□□□□□ -1.36
Retrieved 100 of 5,963 RNA–protein pairs in 29.6 ms