RNA–Protein interactions for RNA: YDR052C

DBF4, Transcript of Regulatory subunit of Cdc7p-Dbf4p kinase complex, yeast

Gene DBF4, Length 2,115 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DBF4	YDR052C	BFR2	Q06631	534 aa	Known RBP	8.28	□□□□□ -1.08
DBF4	YDR052C	RQC2	Q12532	1038 aa	Known RBP	8.15	□□□□□ -1.1
DBF4	YDR052C	MTC1	P47018	478 aa	Known RBP	7.79	□□□□□ -1.16
DBF4	YDR052C	NOP2	P40991	618 aa	Known RBP	7.73	□□□□□ -1.17
DBF4	YDR052C	EBP2	P36049	427 aa	Known RBP	7.52	□□□□□ -1.2
DBF4	YDR052C	CAB3	P36076	571 aa		7.49	□□□□□ -1.21
DBF4	YDR052C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	7.48	□□□□□ -1.21	not detected
DBF4	YDR052C	URN1	Q06525	465 aa	Known RBP	7.45	□□□□□ -1.22
DBF4	YDR052C	SIS2	P36024	562 aa		7.34	□□□□□ -1.23
DBF4	YDR052C	DRS1	P32892	752 aa	Known RBP	7.3	□□□□□ -1.24
DBF4	YDR052C	YPR148C	Q06523	435 aa		7.25	□□□□□ -1.25
DBF4	YDR052C	SKI3	P17883	1432 aa	Known RBP	7.18	□□□□□ -1.26
DBF4	YDR052C	SPA2	P23201	1466 aa	Known RBP	7.17	□□□□□ -1.26
DBF4	YDR052C	AVT3	P36062	692 aa		7.14	□□□□□ -1.27
DBF4	YDR052C	TAF7	Q05021	590 aa		7.07	□□□□□ -1.28
DBF4	YDR052C	YFR016C	P43597	1233 aa	Known RBP	7.07	□□□□□ -1.28
DBF4	YDR052C	SSN2	P38931	1420 aa		7.03	□□□□□ -1.28
DBF4	YDR052C	FAP1	P53971	965 aa		6.95	□□□□□ -1.3
DBF4	YDR052C	SGS1	P35187	1447 aa		6.93	□□□□□ -1.3
DBF4	YDR052C	RPS0B	P46654	252 aa	Known RBP	6.92	□□□□□ -1.3
DBF4	YDR052C	ENP1	P38333	483 aa	Known RBP	6.91	□□□□□ -1.3
DBF4	YDR052C	TCB2	P48231	1178 aa		6.91	□□□□□ -1.3
DBF4	YDR052C	TCB3	Q03640	1545 aa	Known RBP	6.88	□□□□□ -1.31
DBF4	YDR052C	CWC22	P53333	577 aa	Known RBP	6.88	□□□□□ -1.31
DBF4	YDR052C	RSE1	Q04693	1361 aa	Known RBP	6.86	□□□□□ -1.31
DBF4	YDR052C	LEO1	P38439	464 aa		6.81	□□□□□ -1.32
DBF4	YDR052C	DIP2	Q12220	943 aa	Predicted RBP	6.79	□□□□□ -1.32
DBF4	YDR052C	MNN4	P36044	1178 aa		6.79	□□□□□ -1.32
DBF4	YDR052C	KRI1	P42846	591 aa	Known RBP	6.78	□□□□□ -1.32
DBF4	YDR052C	CLC1	P17891	233 aa		6.77	□□□□□ -1.33
DBF4	YDR052C	AIM44	Q99299	758 aa		6.76	□□□□□ -1.33
DBF4	YDR052C	SEC3	P33332	1336 aa	Known RBP	6.76	□□□□□ -1.33
DBF4	YDR052C	STH1	P32597	1359 aa		6.75	□□□□□ -1.33
DBF4	YDR052C	IME2	P32581	645 aa		6.74	□□□□□ -1.33
DBF4	YDR052C	ENV11	P53246	860 aa		6.74	□□□□□ -1.33
DBF4	YDR052C	SPT7	P35177	1332 aa		6.71	□□□□□ -1.34
DBF4	YDR052C	PRS1	P32895	427 aa	Known RBP	6.71	□□□□□ -1.34
DBF4	YDR052C	MMS22	Q06164	1454 aa		6.69	□□□□□ -1.34
DBF4	YDR052C	TFA1	P36100	482 aa		6.69	□□□□□ -1.34
DBF4	YDR052C	YGR130C	P53278	816 aa		6.68	□□□□□ -1.34
DBF4	YDR052C	SPT21	P35209	758 aa		6.68	□□□□□ -1.34
DBF4	YDR052C	FPR3	P38911	411 aa	Known RBP	6.68	□□□□□ -1.34
DBF4	YDR052C	NUG1	P40010	520 aa	Known RBP	6.67	□□□□□ -1.34
DBF4	YDR052C	YRB30	P53107	440 aa	Predicted RBP	6.67	□□□□□ -1.34
DBF4	YDR052C	UFD4	P33202	1483 aa		6.67	□□□□□ -1.34
DBF4	YDR052C	NOP53	Q12080	455 aa	Known RBP	6.66	□□□□□ -1.34
DBF4	YDR052C	DEF1	P35732	738 aa	Known RBP	6.65	□□□□□ -1.34
DBF4	YDR052C	RLF2	Q12495	606 aa		6.65	□□□□□ -1.34
DBF4	YDR052C	QCR6	P00127	147 aa		6.65	□□□□□ -1.35
DBF4	YDR052C	OPY1	P38271	328 aa		6.64	□□□□□ -1.35
DBF4	YDR052C	CHD1	P32657	1468 aa		6.63	□□□□□ -1.35
DBF4	YDR052C	POL5	P39985	1022 aa	Known RBP	6.63	□□□□□ -1.35
DBF4	YDR052C	XRN1	P22147	1528 aa	Known RBP	6.61	□□□□□ -1.35
DBF4	YDR052C	CFT1	Q06632	1357 aa	Known RBP	6.6	□□□□□ -1.35
DBF4	YDR052C	MON2	P48563	1636 aa	Predicted RBP	6.6	□□□□□ -1.35
DBF4	YDR052C	ECM5	Q03214	1411 aa		6.59	□□□□□ -1.35
DBF4	YDR052C	SPP41	P38904	1435 aa		6.58	□□□□□ -1.36
DBF4	YDR052C	RNA1	P11745	407 aa	Known RBP	6.56	□□□□□ -1.36
DBF4	YDR052C	EAF7	P53911	425 aa	Known RBP	6.56	□□□□□ -1.36
DBF4	YDR052C	FPR4	Q06205	392 aa	Predicted RBP	6.56	□□□□□ -1.36
DBF4	YDR052C	PSH1	Q12161	406 aa		6.56	□□□□□ -1.36
DBF4	YDR052C	SAS10	Q12136	610 aa	Predicted RBP	6.55	□□□□□ -1.36
DBF4	YDR052C	PRI1	P10363	409 aa		6.53	□□□□□ -1.36
DBF4	YDR052C	TRM732	Q03496	1420 aa		6.53	□□□□□ -1.36
DBF4	YDR052C	PRY3	P47033	881 aa		6.53	□□□□□ -1.36
DBF4	YDR052C	RPC31	P17890	251 aa		6.52	□□□□□ -1.37
DBF4	YDR052C	SNF7	P39929	240 aa	Known RBP	6.52	□□□□□ -1.37
DBF4	YDR052C	SPT2	P06843	333 aa	Predicted RBP	6.52	□□□□□ -1.37
DBF4	YDR052C	SPC110	P32380	944 aa		6.5	□□□□□ -1.37
DBF4	YDR052C	PAF1	P38351	445 aa		6.5	□□□□□ -1.37
DBF4	YDR052C	AAD16	Q02895	342 aa		6.5	□□□□□ -1.37
DBF4	YDR052C	IKI3	Q06706	1349 aa	Known RBP	6.48	□□□□□ -1.37
DBF4	YDR052C	NAP1	P25293	417 aa	Known RBP	6.48	□□□□□ -1.37
DBF4	YDR052C	YTA7	P40340	1379 aa		6.48	□□□□□ -1.37
DBF4	YDR052C	LEU3	P08638	886 aa		6.47	□□□□□ -1.37
DBF4	YDR052C	RIX1	P38883	763 aa	Predicted RBP	6.47	□□□□□ -1.37
DBF4	YDR052C	ISW2	Q08773	1120 aa		6.46	□□□□□ -1.37
DBF4	YDR052C	FUN12	P39730	1002 aa	Known RBP	6.46	□□□□□ -1.38
DBF4	YDR052C	RAD26	P40352	1085 aa		6.46	□□□□□ -1.38
DBF4	YDR052C	PEP1	P32319	1579 aa		6.46	□□□□□ -1.38
DBF4	YDR052C	ROX1	P25042	368 aa		6.45	□□□□□ -1.38
DBF4	YDR052C	TOP2	P06786	1428 aa	Known RBP	6.45	□□□□□ -1.38
DBF4	YDR052C	NMD2	P38798	1089 aa	Known RBP	6.44	□□□□□ -1.38
DBF4	YDR052C	CTR9	P89105	1077 aa		6.44	□□□□□ -1.38
DBF4	YDR052C	IOC4	Q04213	475 aa		6.44	□□□□□ -1.38
DBF4	YDR052C	SRB8	P25648	1427 aa		6.44	□□□□□ -1.38
DBF4	YDR052C	BUD4	P47136	1447 aa		6.44	□□□□□ -1.38
DBF4	YDR052C	INO80	P53115	1489 aa		6.44	□□□□□ -1.38
DBF4	YDR052C	SWE1	P32944	819 aa		6.43	□□□□□ -1.38
DBF4	YDR052C	PDR10	P51533	1564 aa		6.43	□□□□□ -1.38
DBF4	YDR052C	SSM4	P40318	1319 aa		6.42	□□□□□ -1.38
DBF4	YDR052C	SLN1	P39928	1220 aa	Predicted RBP	6.42	□□□□□ -1.38
DBF4	YDR052C	YNL011C	P53980	444 aa		6.41	□□□□□ -1.38
DBF4	YDR052C	HSP82	P02829	709 aa	Known RBP	6.41	□□□□□ -1.38
DBF4	YDR052C	RTT106	P40161	455 aa		6.41	□□□□□ -1.38
DBF4	YDR052C	RLP24	Q07915	199 aa	Known RBP	6.41	□□□□□ -1.38
DBF4	YDR052C	NOP58	Q12499	511 aa	Known RBP	6.41	□□□□□ -1.38
DBF4	YDR052C	MMS1	Q06211	1407 aa		6.4	□□□□□ -1.39
DBF4	YDR052C	VPS4	P52917	437 aa		6.4	□□□□□ -1.39
DBF4	YDR052C	PLP2	Q12017	286 aa		6.39	□□□□□ -1.39

Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms