RNA–Protein interactions for RNA: YCL039W

GID7, Transcript of Subunit of GID Complex that binds directly to central component Vid30p, yeast

Gene GID7, Length 2,238 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
GID7	YCL039W	RQC2	Q12532	1038 aa	Known RBP	15.6	■□□□□ 0.09
GID7	YCL039W	BFR2	Q06631	534 aa	Known RBP	14.65	□□□□□ -0.06
GID7	YCL039W	TAF7	Q05021	590 aa		14.44	□□□□□ -0.1
GID7	YCL039W	TFA1	P36100	482 aa		13.83	□□□□□ -0.2
GID7	YCL039W	DRS1	P32892	752 aa	Known RBP	13.71	□□□□□ -0.22
GID7	YCL039W	URN1	Q06525	465 aa	Known RBP	13.68	□□□□□ -0.22
GID7	YCL039W	SIS2	P36024	562 aa		12.97	□□□□□ -0.33
GID7	YCL039W	EBP2	P36049	427 aa	Known RBP	12.84	□□□□□ -0.35
GID7	YCL039W	CAB3	P36076	571 aa		12.77	□□□□□ -0.36
GID7	YCL039W	YRB30	P53107	440 aa	Predicted RBP	12.72	□□□□□ -0.37
GID7	YCL039W	YFR016C	P43597	1233 aa	Known RBP	12.69	□□□□□ -0.38
GID7	YCL039W	NAP1	P25293	417 aa	Known RBP	12.67	□□□□□ -0.38
GID7	YCL039W	LEO1	P38439	464 aa		12.58	□□□□□ -0.4
GID7	YCL039W	IOC4	Q04213	475 aa		12.54	□□□□□ -0.4
GID7	YCL039W	RPS0B	P46654	252 aa	Known RBP	12.46	□□□□□ -0.42
GID7	YCL039W	DIP2	Q12220	943 aa	Predicted RBP	12.43	□□□□□ -0.42
GID7	YCL039W	AVT3	P36062	692 aa		12.43	□□□□□ -0.42
GID7	YCL039W	NOP2	P40991	618 aa	Known RBP	12.43	□□□□□ -0.42
GID7	YCL039W	KRI1	P42846	591 aa	Known RBP	12.39	□□□□□ -0.43
GID7	YCL039W	AIM44	Q99299	758 aa		12.39	□□□□□ -0.43
GID7	YCL039W	DMA1	P38823	416 aa		12.29	□□□□□ -0.44
GID7	YCL039W	MNN4	P36044	1178 aa		12.18	□□□□□ -0.46
GID7	YCL039W	IFH1	P39520	1085 aa		12.05	□□□□□ -0.48
GID7	YCL039W	SNU71	P53207	620 aa	Known RBP	12.04	□□□□□ -0.48
GID7	YCL039W	TOP1	P04786	769 aa		12.03	□□□□□ -0.48
GID7	YCL039W	CWC22	P53333	577 aa	Known RBP	11.96	□□□□□ -0.49
GID7	YCL039W	ORC1	P54784	914 aa	Predicted RBP	11.91	□□□□□ -0.5
GID7	YCL039W	DEF1	P35732	738 aa	Known RBP	11.86	□□□□□ -0.51
GID7	YCL039W	PSH1	Q12161	406 aa		11.79	□□□□□ -0.52
GID7	YCL039W	MDG1	P53885	366 aa		11.77	□□□□□ -0.53
GID7	YCL039W	YPR148C	Q06523	435 aa		11.75	□□□□□ -0.53
GID7	YCL039W	MTC1	P47018	478 aa	Known RBP	11.75	□□□□□ -0.53
GID7	YCL039W	RLP24	Q07915	199 aa	Known RBP	11.74	□□□□□ -0.53
GID7	YCL039W	ENV11	P53246	860 aa		11.6	□□□□□ -0.55
GID7	YCL039W	GIN4	Q12263	1142 aa		11.57	□□□□□ -0.56
GID7	YCL039W	NUG1	P40010	520 aa	Known RBP	11.54	□□□□□ -0.56
GID7	YCL039W	HIF1	Q12373	385 aa		11.53	□□□□□ -0.56
GID7	YCL039W	TOA1	P32773	286 aa		11.51	□□□□□ -0.57
GID7	YCL039W	SWE1	P32944	819 aa		11.5	□□□□□ -0.57
GID7	YCL039W	BRL1	P38770	471 aa		11.49	□□□□□ -0.57
GID7	YCL039W	SPT2	P06843	333 aa	Predicted RBP	11.48	□□□□□ -0.57
GID7	YCL039W	HSP82	P02829	709 aa	Known RBP	11.47	□□□□□ -0.57
GID7	YCL039W	LEU3	P08638	886 aa		11.47	□□□□□ -0.57
GID7	YCL039W	RPN1	P38764	993 aa	Known RBP	11.47	□□□□□ -0.57
GID7	YCL039W	FPR3	P38911	411 aa	Known RBP	11.47	□□□□□ -0.57
GID7	YCL039W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	11.46	□□□□□ -0.57	not detected
GID7	YCL039W	PLP2	Q12017	286 aa		11.46	□□□□□ -0.57
GID7	YCL039W	RPS0A	P32905	252 aa	Known RBP	11.45	□□□□□ -0.58
GID7	YCL039W	SUB1	P54000	292 aa	Known RBP	11.43	□□□□□ -0.58
GID7	YCL039W	NOP53	Q12080	455 aa	Known RBP	11.43	□□□□□ -0.58
GID7	YCL039W	TCB2	P48231	1178 aa		11.41	□□□□□ -0.58
GID7	YCL039W	DMA2	P53924	522 aa		11.41	□□□□□ -0.58
GID7	YCL039W	ABP1	P15891	592 aa	Known RBP	11.4	□□□□□ -0.58
GID7	YCL039W	RLF2	Q12495	606 aa		11.4	□□□□□ -0.58
GID7	YCL039W	VPS72	Q03388	795 aa		11.39	□□□□□ -0.59
GID7	YCL039W	RSE1	Q04693	1361 aa	Known RBP	11.37	□□□□□ -0.59
GID7	YCL039W	NHA1	Q99271	985 aa		11.35	□□□□□ -0.59
GID7	YCL039W	ENP1	P38333	483 aa	Known RBP	11.34	□□□□□ -0.59
GID7	YCL039W	SPT7	P35177	1332 aa		11.33	□□□□□ -0.6
GID7	YCL039W	TIF4632	P39936	914 aa	Known RBP	11.33	□□□□□ -0.6
GID7	YCL039W	ASF1	P32447	279 aa		11.32	□□□□□ -0.6
GID7	YCL039W	SSA1	P10591	642 aa	Known RBP	11.31	□□□□□ -0.6
GID7	YCL039W	SSA2	P10592	639 aa	Known RBP	11.31	□□□□□ -0.6
GID7	YCL039W	TLG1	Q03322	224 aa		11.31	□□□□□ -0.6
GID7	YCL039W	SAS10	Q12136	610 aa	Predicted RBP	11.29	□□□□□ -0.6
GID7	YCL039W	TPO2	P53283	614 aa		11.27	□□□□□ -0.61
GID7	YCL039W	RNA1	P11745	407 aa	Known RBP	11.27	□□□□□ -0.61
GID7	YCL039W	SPT16	P32558	1035 aa	Known RBP	11.27	□□□□□ -0.61
GID7	YCL039W	ATG36	P46983	293 aa		11.27	□□□□□ -0.61
GID7	YCL039W	BRN1	P38170	754 aa		11.24	□□□□□ -0.61
GID7	YCL039W	FUN12	P39730	1002 aa	Known RBP	11.24	□□□□□ -0.61
GID7	YCL039W	QCR6	P00127	147 aa		11.23	□□□□□ -0.61
GID7	YCL039W	MPP10	P47083	593 aa	Known RBP	11.23	□□□□□ -0.61
GID7	YCL039W	FPR4	Q06205	392 aa	Predicted RBP	11.2	□□□□□ -0.62
GID7	YCL039W	RIX1	P38883	763 aa	Predicted RBP	11.19	□□□□□ -0.62
GID7	YCL039W	OSW7	P43611	510 aa		11.16	□□□□□ -0.62
GID7	YCL039W	GRX3	Q03835	250 aa		11.15	□□□□□ -0.62
GID7	YCL039W	ISW1	P38144	1129 aa		11.15	□□□□□ -0.63
GID7	YCL039W	YGR130C	P53278	816 aa		11.14	□□□□□ -0.63
GID7	YCL039W	RTS3	P53289	263 aa		11.14	□□□□□ -0.63
GID7	YCL039W	INO80	P53115	1489 aa		11.13	□□□□□ -0.63
GID7	YCL039W	PIL1	P53252	339 aa	Known RBP	11.13	□□□□□ -0.63
GID7	YCL039W	YNL011C	P53980	444 aa		11.12	□□□□□ -0.63
GID7	YCL039W	LAM6	Q08001	693 aa		11.11	□□□□□ -0.63
GID7	YCL039W	YTA7	P40340	1379 aa		11.06	□□□□□ -0.64
GID7	YCL039W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	11.06	□□□□□ -0.64	not detected
GID7	YCL039W	SPT21	P35209	758 aa		11.05	□□□□□ -0.64
GID7	YCL039W	NMD2	P38798	1089 aa	Known RBP	11.05	□□□□□ -0.64
GID7	YCL039W	KIP3	P53086	805 aa	Known RBP	11.05	□□□□□ -0.64
GID7	YCL039W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	11.04	□□□□□ -0.64	not detected
GID7	YCL039W	YSH1	Q06224	779 aa	Predicted RBP	11.04	□□□□□ -0.64
GID7	YCL039W	BUD21	Q08492	214 aa	Predicted RBP	11.04	□□□□□ -0.64
GID7	YCL039W	YMR196W	Q04336	1088 aa		11.04	□□□□□ -0.64
GID7	YCL039W	TAF13	P11747	167 aa		11.03	□□□□□ -0.64
GID7	YCL039W	SPC110	P32380	944 aa		11.03	□□□□□ -0.64
GID7	YCL039W	SSP1	P38871	571 aa		11.03	□□□□□ -0.64
GID7	YCL039W	DAL5	P15365	543 aa		11.03	□□□□□ -0.64
GID7	YCL039W	YML020W	Q03722	664 aa		11.01	□□□□□ -0.65
GID7	YCL039W	FAR11	P53917	953 aa		10.99	□□□□□ -0.65
GID7	YCL039W	HSC82	P15108	705 aa	Known RBP	10.99	□□□□□ -0.65

Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms