RNA–Protein interactions for RNA: YAL021C

CCR4, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CCR4, Length 2,514 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CCR4YAL021C MTC1P47018 478 aaKnown RBP12.32□□□□□ -0.44
CCR4YAL021C RQC2Q12532 1038 aaKnown RBP12.23□□□□□ -0.45
CCR4YAL021C DRS1P32892 752 aaKnown RBP11.97□□□□□ -0.49
CCR4YAL021C BFR2Q06631 534 aaKnown RBP11.95□□□□□ -0.5
CCR4YAL021C URN1Q06525 465 aaKnown RBP11□□□□□ -0.65
CCR4YAL021C TAF7Q05021 590 aa10.91□□□□□ -0.66
CCR4YAL021C FAP1P53971 965 aa10.81□□□□□ -0.68
CCR4YAL021C EBP2P36049 427 aaKnown RBP10.65□□□□□ -0.7
CCR4YAL021C NOP2P40991 618 aaKnown RBP10.6□□□□□ -0.71
CCR4YAL021C SIS2P36024 562 aa10.59□□□□□ -0.71
CCR4YAL021C CAB3P36076 571 aa10.54□□□□□ -0.72
CCR4YAL021C AVT3P36062 692 aa10.35□□□□□ -0.75
CCR4YAL021C YFR016CP43597 1233 aaKnown RBP10.32□□□□□ -0.76
CCR4YAL021C DIP2Q12220 943 aaPredicted RBP10.31□□□□□ -0.76
CCR4YAL021C ISW2Q08773 1120 aa10.24□□□□□ -0.77
CCR4YAL021C TFA1P36100 482 aa10.12□□□□□ -0.79
CCR4YAL021C PRI1P10363 409 aa10.12□□□□□ -0.79
CCR4YAL021C AAD16Q02895 342 aa10.11□□□□□ -0.79
CCR4YAL021C NSR1P27476 414 aaKnown RBP RIP-Chip data10.1□□□□□ -0.79not detected
CCR4YAL021C PRY3P47033 881 aa10.1□□□□□ -0.79
CCR4YAL021C YPR148CQ06523 435 aa10.08□□□□□ -0.8
CCR4YAL021C RPG1P38249 964 aaKnown RBP10.04□□□□□ -0.8
CCR4YAL021C RPS0BP46654 252 aaKnown RBP10.02□□□□□ -0.81
CCR4YAL021C KRI1P42846 591 aaKnown RBP9.98□□□□□ -0.81
CCR4YAL021C CWC22P53333 577 aaKnown RBP9.92□□□□□ -0.82
CCR4YAL021C RSE1Q04693 1361 aaKnown RBP9.92□□□□□ -0.82
CCR4YAL021C YRB30P53107 440 aaPredicted RBP9.89□□□□□ -0.83
CCR4YAL021C IOC4Q04213 475 aa9.84□□□□□ -0.83
CCR4YAL021C NAP1P25293 417 aaKnown RBP9.78□□□□□ -0.84
CCR4YAL021C TSR3Q12094 313 aaKnown RBP9.66□□□□□ -0.86
CCR4YAL021C ENV11P53246 860 aa9.63□□□□□ -0.87
CCR4YAL021C YCK3P39962 524 aa9.62□□□□□ -0.87
CCR4YAL021C RPL17AP05740 184 aaKnown RBP9.58□□□□□ -0.88
CCR4YAL021C RPL17BP46990 184 aaKnown RBP9.58□□□□□ -0.88
CCR4YAL021C DEF1P35732 738 aaKnown RBP9.57□□□□□ -0.88
CCR4YAL021C REB1P21538 810 aa9.56□□□□□ -0.88
CCR4YAL021C TCB2P48231 1178 aa9.56□□□□□ -0.88
CCR4YAL021C PSH1Q12161 406 aa9.55□□□□□ -0.88
CCR4YAL021C HAA1Q12753 694 aaKnown RBP9.48□□□□□ -0.89
CCR4YAL021C NUG1P40010 520 aaKnown RBP9.48□□□□□ -0.89
CCR4YAL021C MNN4P36044 1178 aa9.47□□□□□ -0.89
CCR4YAL021C SPT7P35177 1332 aa9.47□□□□□ -0.89
CCR4YAL021C LEO1P38439 464 aa9.46□□□□□ -0.89
CCR4YAL021C AIM44Q99299 758 aa9.46□□□□□ -0.89
CCR4YAL021C RLP24Q07915 199 aaKnown RBP9.43□□□□□ -0.9
CCR4YAL021C SPT21P35209 758 aa9.41□□□□□ -0.9
CCR4YAL021C NOP53Q12080 455 aaKnown RBP9.41□□□□□ -0.9
CCR4YAL021C IFH1P39520 1085 aa9.39□□□□□ -0.91
CCR4YAL021C MRPL32P25348 183 aa9.38□□□□□ -0.91
CCR4YAL021C SNU71P53207 620 aaKnown RBP9.37□□□□□ -0.91
CCR4YAL021C YGR130CP53278 816 aa9.34□□□□□ -0.91
CCR4YAL021C SPT2P06843 333 aaPredicted RBP9.33□□□□□ -0.92
CCR4YAL021C RLF2Q12495 606 aa9.33□□□□□ -0.92
CCR4YAL021C SKI3P17883 1432 aaKnown RBP9.31□□□□□ -0.92
CCR4YAL021C MDG1P53885 366 aa9.31□□□□□ -0.92
CCR4YAL021C FPR3P38911 411 aaKnown RBP9.29□□□□□ -0.92
CCR4YAL021C SEC3P33332 1336 aaKnown RBP9.28□□□□□ -0.92
CCR4YAL021C FPR4Q06205 392 aaPredicted RBP9.26□□□□□ -0.93
CCR4YAL021C TOP1P04786 769 aa9.24□□□□□ -0.93
CCR4YAL021C RNA1P11745 407 aaKnown RBP9.22□□□□□ -0.93
CCR4YAL021C ORC1P54784 914 aaPredicted RBP9.22□□□□□ -0.93
CCR4YAL021C QCR6P00127 147 aa9.21□□□□□ -0.94
CCR4YAL021C TIF4632P39936 914 aaKnown RBP9.21□□□□□ -0.94
CCR4YAL021C CLC1P17891 233 aa9.2□□□□□ -0.94
CCR4YAL021C GRX3Q03835 250 aa9.2□□□□□ -0.94
CCR4YAL021C ENP1P38333 483 aaKnown RBP9.19□□□□□ -0.94
CCR4YAL021C HSP82P02829 709 aaKnown RBP9.18□□□□□ -0.94
CCR4YAL021C RPN1P38764 993 aaKnown RBP9.17□□□□□ -0.94
CCR4YAL021C PLP2Q12017 286 aa9.16□□□□□ -0.94
CCR4YAL021C TCB3Q03640 1545 aaKnown RBP9.15□□□□□ -0.94
CCR4YAL021C SPC110P32380 944 aa9.14□□□□□ -0.95
CCR4YAL021C YNL011CP53980 444 aa9.14□□□□□ -0.95
CCR4YAL021C YTA7P40340 1379 aa9.14□□□□□ -0.95
CCR4YAL021C FUN12P39730 1002 aaKnown RBP9.14□□□□□ -0.95
CCR4YAL021C DMA1P38823 416 aa9.13□□□□□ -0.95
CCR4YAL021C INO80P53115 1489 aa9.13□□□□□ -0.95
CCR4YAL021C IME2P32581 645 aa9.11□□□□□ -0.95
CCR4YAL021C SGS1P35187 1447 aa9.11□□□□□ -0.95
CCR4YAL021C HIF1Q12373 385 aa9.09□□□□□ -0.95
CCR4YAL021C NMD2P38798 1089 aaKnown RBP9.08□□□□□ -0.96
CCR4YAL021C VPS4P52917 437 aa9.07□□□□□ -0.96
CCR4YAL021C RIX1P38883 763 aaPredicted RBP9.06□□□□□ -0.96
CCR4YAL021C PIL1P53252 339 aaKnown RBP9.06□□□□□ -0.96
CCR4YAL021C ETT1Q08421 412 aaKnown RBP9.06□□□□□ -0.96
CCR4YAL021C SSA1P10591 642 aaKnown RBP9.06□□□□□ -0.96
CCR4YAL021C SSA2P10592 639 aaKnown RBP9.06□□□□□ -0.96
CCR4YAL021C NHA1Q99271 985 aa9.05□□□□□ -0.96
CCR4YAL021C TOA1P32773 286 aa9.04□□□□□ -0.96
CCR4YAL021C TLG1Q03322 224 aa9.04□□□□□ -0.96
CCR4YAL021C RPS0AP32905 252 aaKnown RBP9.04□□□□□ -0.96
CCR4YAL021C GIN4Q12263 1142 aa9.02□□□□□ -0.97
CCR4YAL021C SWE1P32944 819 aa9□□□□□ -0.97
CCR4YAL021C SUB1P54000 292 aaKnown RBP9□□□□□ -0.97
CCR4YAL021C DOS2P54858 310 aa8.99□□□□□ -0.97
CCR4YAL021C SAS10Q12136 610 aaPredicted RBP8.98□□□□□ -0.97
CCR4YAL021C SPA2P23201 1466 aaKnown RBP8.96□□□□□ -0.98
CCR4YAL021C ECM16Q04217 1267 aaKnown RBP8.95□□□□□ -0.98
CCR4YAL021C MSH3P25336 1018 aa8.94□□□□□ -0.98
CCR4YAL021C SIC1P38634 284 aa8.94□□□□□ -0.98
CCR4YAL021C NNF2P53253 936 aa8.94□□□□□ -0.98
Retrieved 100 of 5,963 RNA–protein pairs in 16.2 ms