RNA–Protein interactions for RNA: ENST00000637004.1

CACNA1A-235, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 2,829 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-235ENST00000637004 NISCHQ9Y2I1 1504 aa30.69■■■□□ 2.5
CACNA1A-235ENST00000637004 CCDC180Q9P1Z9 1646 aa26.77■■□□□ 1.88
CACNA1A-235ENST00000637004 ABCC9O60706 1549 aa26.51■■□□□ 1.83
CACNA1A-235ENST00000637004 DCAF8L2P0C7V8 631 aa26.23■■□□□ 1.79
CACNA1A-235ENST00000637004 SHROOM4Q9ULL8 1493 aa26.17■■□□□ 1.78
CACNA1A-235ENST00000637004 HRCP23327 699 aa26.12■■□□□ 1.77
CACNA1A-235ENST00000637004 SUPT5HO00267 1087 aaKnown RBP26.04■■□□□ 1.76
CACNA1A-235ENST00000637004 CHIC1Q5VXU3 224 aa25.66■■□□□ 1.7
CACNA1A-235ENST00000637004 MYO15BQ96JP2 1530 aa25.66■■□□□ 1.7
CACNA1A-235ENST00000637004 PCGF6Q9BYE7 350 aa25.59■■□□□ 1.69
CACNA1A-235ENST00000637004 ZCCHC6Q5VYS8 1495 aaKnown RBP25.59■■□□□ 1.69
CACNA1A-235ENST00000637004 PPARGC1BQ86YN6 1023 aaKnown RBP25.35■■□□□ 1.65
CACNA1A-235ENST00000637004 DCAF1Q9Y4B6 1507 aa25.31■■□□□ 1.64
CACNA1A-235ENST00000637004 RB1CC1Q8TDY2 1594 aa25.23■■□□□ 1.63
CACNA1A-235ENST00000637004 NACADO15069 1562 aa25.22■■□□□ 1.63
CACNA1A-235ENST00000637004 PABPN1Q86U42 306 aaKnown RBP eCLIP25.06■■□□□ 1.6
CACNA1A-235ENST00000637004 PELP1Q8IZL8 1130 aaKnown RBP25.03■■□□□ 1.6
CACNA1A-235ENST00000637004 TRIM26Q12899 539 aaPredicted RBP24.99■■□□□ 1.59
CACNA1A-235ENST00000637004 SCRIBQ14160 1630 aa24.96■■□□□ 1.59
CACNA1A-235ENST00000637004 LOC105371045A0A1W2PR82 267 aa24.9■■□□□ 1.58
CACNA1A-235ENST00000637004 ZEB1P37275 1124 aaPredicted RBP24.84■■□□□ 1.57
CACNA1A-235ENST00000637004 UNC13AQ9UPW8 1703 aa24.69■■□□□ 1.54
CACNA1A-235ENST00000637004 BICRAQ9NZM4 1560 aa24.56■■□□□ 1.52
CACNA1A-235ENST00000637004 SCAF1Q9H7N4 1312 aaKnown RBP24.46■■□□□ 1.51
CACNA1A-235ENST00000637004 MYT1Q01538 1121 aa24.29■■□□□ 1.48
CACNA1A-235ENST00000637004 TRIM41Q8WV44 630 aa24.24■■□□□ 1.47
CACNA1A-235ENST00000637004 DNAJC5BQ9UF47 199 aa24.18■■□□□ 1.46
CACNA1A-235ENST00000637004 CECR2Q9BXF3 1484 aa24.13■■□□□ 1.45
CACNA1A-235ENST00000637004 RSF1Q96T23 1441 aaPredicted RBP24.1■■□□□ 1.45
CACNA1A-235ENST00000637004 ACIN1Q9UKV3 1341 aaKnown RBP24.05■■□□□ 1.44
CACNA1A-235ENST00000637004 FAM9AQ8IZU1 332 aaPredicted RBP24.02■■□□□ 1.44
CACNA1A-235ENST00000637004 EIF4G1Q04637 1599 aaKnown RBP23.91■■□□□ 1.42
CACNA1A-235ENST00000637004 NEUROD1Q13562 356 aa23.89■■□□□ 1.42
CACNA1A-235ENST00000637004 CENPBP07199 599 aaPredicted RBP23.88■■□□□ 1.41
CACNA1A-235ENST00000637004 CCER1Q8TC90 406 aaPredicted RBP23.84■■□□□ 1.41
CACNA1A-235ENST00000637004 MROH2BQ7Z745 1585 aa23.81■■□□□ 1.4
CACNA1A-235ENST00000637004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.79■■□□□ 1.4
CACNA1A-235ENST00000637004 EHMT2Q96KQ7 1210 aa23.77■■□□□ 1.4
CACNA1A-235ENST00000637004 GTF3C3Q9Y5Q9 886 aa23.77■■□□□ 1.4
CACNA1A-235ENST00000637004 DIEXFQ68CQ4 756 aaKnown RBP23.76■■□□□ 1.39
CACNA1A-235ENST00000637004 CC2D2AQ9P2K1 1620 aa23.76■■□□□ 1.39
CACNA1A-235ENST00000637004 SMARCA4P51532 1647 aa23.69■■□□□ 1.38
CACNA1A-235ENST00000637004 BAZ1AQ9NRL2 1556 aaPredicted RBP23.69■■□□□ 1.38
CACNA1A-235ENST00000637004 ATAD2BQ9ULI0 1458 aa23.56■■□□□ 1.36
CACNA1A-235ENST00000637004 WIZO95785 1651 aa23.56■■□□□ 1.36
CACNA1A-235ENST00000637004 WRNQ14191 1432 aaPredicted RBP eCLIP23.47■■□□□ 1.35
CACNA1A-235ENST00000637004 BAZ1BQ9UIG0 1483 aaKnown RBP23.42■■□□□ 1.34
CACNA1A-235ENST00000637004 ZNF316A6NFI3 1004 aaPredicted RBP23.41■■□□□ 1.34
CACNA1A-235ENST00000637004 SMARCA2P51531 1590 aa23.39■■□□□ 1.33
CACNA1A-235ENST00000637004 NCAPD3P42695 1498 aa23.38■■□□□ 1.33
CACNA1A-235ENST00000637004 CEP162Q5TB80 1403 aa23.27■■□□□ 1.32
CACNA1A-235ENST00000637004 PEG3Q9GZU2 1588 aa23.27■■□□□ 1.32
CACNA1A-235ENST00000637004 TNIKQ9UKE5 1360 aa23.21■■□□□ 1.31
CACNA1A-235ENST00000637004 TTBK1Q5TCY1 1321 aaPredicted RBP23.21■■□□□ 1.31
CACNA1A-235ENST00000637004 YTHDC1Q96MU7 727 aaKnown RBP23.19■■□□□ 1.3
CACNA1A-235ENST00000637004 HMGXB3Q12766 1538 aa23.18■■□□□ 1.3
CACNA1A-235ENST00000637004 TOP2AP11388 1531 aaKnown RBP23.13■■□□□ 1.29
CACNA1A-235ENST00000637004 MIER1Q8N108 512 aa23.11■■□□□ 1.29
CACNA1A-235ENST00000637004 CCDC88BA6NC98 1476 aa23.11■■□□□ 1.29
CACNA1A-235ENST00000637004 EEA1Q15075 1411 aa23.1■■□□□ 1.29
CACNA1A-235ENST00000637004 NESP48681 1621 aa23.06■■□□□ 1.28
CACNA1A-235ENST00000637004 ABCC8Q09428 1581 aa23.04■■□□□ 1.28
CACNA1A-235ENST00000637004 CSRNP3Q8WYN3 585 aa23.01■■□□□ 1.27
CACNA1A-235ENST00000637004 SOGA1O94964 1423 aa23.01■■□□□ 1.27
CACNA1A-235ENST00000637004 UBTFP17480 764 aaKnown RBP23■■□□□ 1.27
CACNA1A-235ENST00000637004 CLSPNQ9HAW4 1339 aa22.97■■□□□ 1.27
CACNA1A-235ENST00000637004 GOLGA3Q08378 1498 aa22.94■■□□□ 1.26
CACNA1A-235ENST00000637004 HNRNPUL2Q1KMD3 747 aaKnown RBP22.88■■□□□ 1.25
CACNA1A-235ENST00000637004 CADPSQ9ULU8 1353 aa22.86■■□□□ 1.25
CACNA1A-235ENST00000637004 RUSC2Q8N2Y8 1516 aa22.81■■□□□ 1.24
CACNA1A-235ENST00000637004 CEP164Q9UPV0 1460 aa22.74■■□□□ 1.23
CACNA1A-235ENST00000637004 ERCC6Q03468 1493 aa22.73■■□□□ 1.23
CACNA1A-235ENST00000637004 CFTRP13569 1480 aa22.72■■□□□ 1.23
CACNA1A-235ENST00000637004 SUPT16HQ9Y5B9 1047 aaKnown RBP22.72■■□□□ 1.23
CACNA1A-235ENST00000637004 APLP2Q06481 763 aa22.71■■□□□ 1.23
CACNA1A-235ENST00000637004 CLIP1P30622 1438 aa22.71■■□□□ 1.23
CACNA1A-235ENST00000637004 VPS8Q8N3P4 1428 aa22.7■■□□□ 1.22
CACNA1A-235ENST00000637004 KIF21BO75037 1637 aa22.67■■□□□ 1.22
CACNA1A-235ENST00000637004 LAMC3Q9Y6N6 1575 aa22.63■■□□□ 1.21
CACNA1A-235ENST00000637004 PDS5BQ9NTI5 1447 aa22.62■■□□□ 1.21
CACNA1A-235ENST00000637004 FANCD2Q9BXW9 1451 aa22.62■■□□□ 1.21
CACNA1A-235ENST00000637004 BCL11AQ9H165 835 aa22.58■■□□□ 1.2
CACNA1A-235ENST00000637004 PRKCSHP14314 528 aaPredicted RBP22.56■■□□□ 1.2
CACNA1A-235ENST00000637004 ANP32EQ9BTT0 268 aa22.54■■□□□ 1.2
CACNA1A-235ENST00000637004 TSHZ2Q9NRE2 1034 aa22.54■■□□□ 1.2
CACNA1A-235ENST00000637004 KIF21AQ7Z4S6 1674 aa22.53■■□□□ 1.2
CACNA1A-235ENST00000637004 DHX57Q6P158 1386 aaKnown RBP22.53■■□□□ 1.2
CACNA1A-235ENST00000637004 SYNJ1O43426 1573 aa22.43■■□□□ 1.18
CACNA1A-235ENST00000637004 RAPGEF2Q9Y4G8 1499 aa22.41■■□□□ 1.18
CACNA1A-235ENST00000637004 URB2Q14146 1524 aaKnown RBP22.37■■□□□ 1.17
CACNA1A-235ENST00000637004 MRC2Q9UBG0 1479 aa22.34■■□□□ 1.17
CACNA1A-235ENST00000637004 RANGAP1P46060 587 aaPredicted RBP22.3■■□□□ 1.16
CACNA1A-235ENST00000637004 CUX2O14529 1486 aa22.28■■□□□ 1.16
CACNA1A-235ENST00000637004 RRBP1Q9P2E9 1410 aaKnown RBP22.27■■□□□ 1.16
CACNA1A-235ENST00000637004 THOC2Q8NI27 1593 aaKnown RBP22.27■■□□□ 1.15
CACNA1A-235ENST00000637004 CUX1P39880 1505 aa22.26■■□□□ 1.15
CACNA1A-235ENST00000637004 TOPBP1Q92547 1522 aa22.26■■□□□ 1.15
CACNA1A-235ENST00000637004 PRDM2Q13029 1718 aa22.26■■□□□ 1.15
CACNA1A-235ENST00000637004 ERICH3Q5RHP9 1530 aa22.21■■□□□ 1.15
CACNA1A-235ENST00000637004 ARAP1Q96P48 1450 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms