RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-223ENST00000636306 NISCHQ9Y2I1 1504 aa22.33■■□□□ 1.17
CHD2-223ENST00000636306 CCDC180Q9P1Z9 1646 aa19.48■□□□□ 0.71
CHD2-223ENST00000636306 ZCCHC6Q5VYS8 1495 aaKnown RBP18.86■□□□□ 0.61
CHD2-223ENST00000636306 DCAF1Q9Y4B6 1507 aa18.56■□□□□ 0.56
CHD2-223ENST00000636306 PELP1Q8IZL8 1130 aaKnown RBP18.53■□□□□ 0.56
CHD2-223ENST00000636306 SHROOM4Q9ULL8 1493 aa18.32■□□□□ 0.52
CHD2-223ENST00000636306 MYO15BQ96JP2 1530 aa18.23■□□□□ 0.51
CHD2-223ENST00000636306 DCAF8L2P0C7V8 631 aa18.17■□□□□ 0.5
CHD2-223ENST00000636306 HRCP23327 699 aa18.13■□□□□ 0.49
CHD2-223ENST00000636306 MYT1Q01538 1121 aa18.09■□□□□ 0.49
CHD2-223ENST00000636306 NACADO15069 1562 aa17.99■□□□□ 0.47
CHD2-223ENST00000636306 ABCC9O60706 1549 aa17.88■□□□□ 0.45
CHD2-223ENST00000636306 SCRIBQ14160 1630 aa17.83■□□□□ 0.44
CHD2-223ENST00000636306 SUPT5HO00267 1087 aaKnown RBP17.81■□□□□ 0.44
CHD2-223ENST00000636306 RB1CC1Q8TDY2 1594 aa17.76■□□□□ 0.43
CHD2-223ENST00000636306 RSF1Q96T23 1441 aaPredicted RBP17.4■□□□□ 0.38
CHD2-223ENST00000636306 UNC13AQ9UPW8 1703 aa17.38■□□□□ 0.37
CHD2-223ENST00000636306 PPARGC1BQ86YN6 1023 aaKnown RBP17.38■□□□□ 0.37
CHD2-223ENST00000636306 BAZ1AQ9NRL2 1556 aaPredicted RBP17.29■□□□□ 0.36
CHD2-223ENST00000636306 SCAF1Q9H7N4 1312 aaKnown RBP17.27■□□□□ 0.35
CHD2-223ENST00000636306 PCGF6Q9BYE7 350 aa17.26■□□□□ 0.35
CHD2-223ENST00000636306 CHIC1Q5VXU3 224 aa17.24■□□□□ 0.35
CHD2-223ENST00000636306 CECR2Q9BXF3 1484 aa17.22■□□□□ 0.35
CHD2-223ENST00000636306 MROH2BQ7Z745 1585 aa17.21■□□□□ 0.35
CHD2-223ENST00000636306 TTBK1Q5TCY1 1321 aaPredicted RBP17.18■□□□□ 0.34
CHD2-223ENST00000636306 SMARCA4P51532 1647 aa17.14■□□□□ 0.34
CHD2-223ENST00000636306 WIZO95785 1651 aa17.12■□□□□ 0.33
CHD2-223ENST00000636306 BICRAQ9NZM4 1560 aa17.1■□□□□ 0.33
CHD2-223ENST00000636306 ZEB1P37275 1124 aaPredicted RBP17.07■□□□□ 0.32
CHD2-223ENST00000636306 TOP2AP11388 1531 aaKnown RBP17.04■□□□□ 0.32
CHD2-223ENST00000636306 PEG3Q9GZU2 1588 aa16.94■□□□□ 0.3
CHD2-223ENST00000636306 EIF4G1Q04637 1599 aaKnown RBP16.87■□□□□ 0.29
CHD2-223ENST00000636306 TRIM26Q12899 539 aaPredicted RBP16.85■□□□□ 0.29
CHD2-223ENST00000636306 SMARCA2P51531 1590 aa16.85■□□□□ 0.29
CHD2-223ENST00000636306 ACIN1Q9UKV3 1341 aaKnown RBP16.84■□□□□ 0.29
CHD2-223ENST00000636306 PABPN1Q86U42 306 aaKnown RBP eCLIP16.82■□□□□ 0.28
CHD2-223ENST00000636306 TRIM41Q8WV44 630 aa16.78■□□□□ 0.28
CHD2-223ENST00000636306 CCDC88BA6NC98 1476 aa16.76■□□□□ 0.27
CHD2-223ENST00000636306 ATAD2BQ9ULI0 1458 aa16.7■□□□□ 0.26
CHD2-223ENST00000636306 BAZ1BQ9UIG0 1483 aaKnown RBP16.69■□□□□ 0.26
CHD2-223ENST00000636306 CENPBP07199 599 aaPredicted RBP16.63■□□□□ 0.25
CHD2-223ENST00000636306 HMGXB3Q12766 1538 aa16.62■□□□□ 0.25
CHD2-223ENST00000636306 NEUROD1Q13562 356 aa16.61■□□□□ 0.25
CHD2-223ENST00000636306 GTF3C3Q9Y5Q9 886 aa16.59■□□□□ 0.25
CHD2-223ENST00000636306 ABCC8Q09428 1581 aa16.53■□□□□ 0.24
CHD2-223ENST00000636306 NCAPD3P42695 1498 aa16.51■□□□□ 0.23
CHD2-223ENST00000636306 LOC105371045A0A1W2PR82 267 aa16.49■□□□□ 0.23
CHD2-223ENST00000636306 EEA1Q15075 1411 aa16.49■□□□□ 0.23
CHD2-223ENST00000636306 WRNQ14191 1432 aaPredicted RBP eCLIP16.43■□□□□ 0.22
CHD2-223ENST00000636306 FAM9AQ8IZU1 332 aaPredicted RBP16.39■□□□□ 0.21
CHD2-223ENST00000636306 BCL11AQ9H165 835 aa16.39■□□□□ 0.21
CHD2-223ENST00000636306 PRDM2Q13029 1718 aa16.38■□□□□ 0.21
CHD2-223ENST00000636306 SYNJ1O43426 1573 aa16.34■□□□□ 0.21
CHD2-223ENST00000636306 BIVM-ERCC5R4GMW8 1640 aa16.32■□□□□ 0.2
CHD2-223ENST00000636306 AEBP2Q6ZN18 517 aaPredicted RBP16.31■□□□□ 0.2
CHD2-223ENST00000636306 TOP2BQ02880 1626 aa16.3■□□□□ 0.2
CHD2-223ENST00000636306 CC2D2AQ9P2K1 1620 aa16.25■□□□□ 0.19
CHD2-223ENST00000636306 CFTRP13569 1480 aa16.25■□□□□ 0.19
CHD2-223ENST00000636306 KIF21BO75037 1637 aa16.24■□□□□ 0.19
CHD2-223ENST00000636306 SOGA1O94964 1423 aa16.23■□□□□ 0.19
CHD2-223ENST00000636306 GOLGA3Q08378 1498 aa16.23■□□□□ 0.19
CHD2-223ENST00000636306 DIEXFQ68CQ4 756 aaKnown RBP16.21■□□□□ 0.19
CHD2-223ENST00000636306 CEP164Q9UPV0 1460 aa16.2■□□□□ 0.18
CHD2-223ENST00000636306 CSRNP3Q8WYN3 585 aa16.19■□□□□ 0.18
CHD2-223ENST00000636306 TNIKQ9UKE5 1360 aa16.19■□□□□ 0.18
CHD2-223ENST00000636306 ANP32EQ9BTT0 268 aa16.18■□□□□ 0.18
CHD2-223ENST00000636306 CEP162Q5TB80 1403 aa16.13■□□□□ 0.17
CHD2-223ENST00000636306 RUSC2Q8N2Y8 1516 aa16.11■□□□□ 0.17
CHD2-223ENST00000636306 CLSPNQ9HAW4 1339 aa16.11■□□□□ 0.17
CHD2-223ENST00000636306 CUX1P39880 1505 aa16.1■□□□□ 0.17
CHD2-223ENST00000636306 CADPSQ9ULU8 1353 aa16.09■□□□□ 0.17
CHD2-223ENST00000636306 PRKCSHP14314 528 aaPredicted RBP16.09■□□□□ 0.17
CHD2-223ENST00000636306 EHMT2Q96KQ7 1210 aa16.09■□□□□ 0.17
CHD2-223ENST00000636306 DNAJC5BQ9UF47 199 aa16.09■□□□□ 0.17
CHD2-223ENST00000636306 ERICH3Q5RHP9 1530 aa16.07■□□□□ 0.16
CHD2-223ENST00000636306 ERICH6Q7L0X2 663 aa16.06■□□□□ 0.16
CHD2-223ENST00000636306 UBTFP17480 764 aaKnown RBP16.02■□□□□ 0.15
CHD2-223ENST00000636306 KIF27Q86VH2 1401 aa16.01■□□□□ 0.15
CHD2-223ENST00000636306 LAMC3Q9Y6N6 1575 aa15.99■□□□□ 0.15
CHD2-223ENST00000636306 FANCD2Q9BXW9 1451 aa15.95■□□□□ 0.14
CHD2-223ENST00000636306 PRXQ9BXM0 1461 aa15.95■□□□□ 0.14
CHD2-223ENST00000636306 DNMBPQ6XZF7 1577 aa15.94■□□□□ 0.14
CHD2-223ENST00000636306 RAPGEF2Q9Y4G8 1499 aa15.94■□□□□ 0.14
CHD2-223ENST00000636306 CLIP1P30622 1438 aa15.93■□□□□ 0.14
CHD2-223ENST00000636306 CCER1Q8TC90 406 aaPredicted RBP15.91■□□□□ 0.14
CHD2-223ENST00000636306 FGD5Q6ZNL6 1462 aa15.89■□□□□ 0.13
CHD2-223ENST00000636306 ZNF316A6NFI3 1004 aaPredicted RBP15.88■□□□□ 0.13
CHD2-223ENST00000636306 VPS8Q8N3P4 1428 aa15.86■□□□□ 0.13
CHD2-223ENST00000636306 CUX2O14529 1486 aa15.85■□□□□ 0.13
CHD2-223ENST00000636306 TOPBP1Q92547 1522 aa15.82■□□□□ 0.12
CHD2-223ENST00000636306 APLP2Q06481 763 aa15.82■□□□□ 0.12
CHD2-223ENST00000636306 TSHZ2Q9NRE2 1034 aa15.82■□□□□ 0.12
CHD2-223ENST00000636306 PDS5BQ9NTI5 1447 aa15.81■□□□□ 0.12
CHD2-223ENST00000636306 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.8■□□□□ 0.12
CHD2-223ENST00000636306 ABCA10Q8WWZ4 1543 aa15.79■□□□□ 0.12
CHD2-223ENST00000636306 CUL7Q14999 1698 aa15.79■□□□□ 0.12
CHD2-223ENST00000636306 WDR97A6NE52 1622 aa15.77■□□□□ 0.11
CHD2-223ENST00000636306 NESP48681 1621 aa15.77■□□□□ 0.11
CHD2-223ENST00000636306 POLA1P09884 1462 aaPredicted RBP15.75■□□□□ 0.11
CHD2-223ENST00000636306 YTHDC1Q96MU7 727 aaKnown RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms