RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 NISCHQ9Y2I1 1504 aa26.09■■□□□ 1.77
LINC00538-201ENST00000626109 CCDC180Q9P1Z9 1646 aa23.03■■□□□ 1.28
LINC00538-201ENST00000626109 SLC24A1O60721 1099 aa22.72■■□□□ 1.23
LINC00538-201ENST00000626109 ABCC9O60706 1549 aa22.15■■□□□ 1.14
LINC00538-201ENST00000626109 ZCCHC6Q5VYS8 1495 aaKnown RBP21.83■■□□□ 1.09
LINC00538-201ENST00000626109 DCAF8L2P0C7V8 631 aa21.67■■□□□ 1.06
LINC00538-201ENST00000626109 DCAF1Q9Y4B6 1507 aa21.61■■□□□ 1.05
LINC00538-201ENST00000626109 NACADO15069 1562 aa21.56■■□□□ 1.04
LINC00538-201ENST00000626109 MYO15BQ96JP2 1530 aa21.55■■□□□ 1.04
LINC00538-201ENST00000626109 RB1CC1Q8TDY2 1594 aa21.49■■□□□ 1.03
LINC00538-201ENST00000626109 CHIC1Q5VXU3 224 aa21.41■■□□□ 1.02
LINC00538-201ENST00000626109 EHMT2Q96KQ7 1210 aa21.15■□□□□ 0.98
LINC00538-201ENST00000626109 SCRIBQ14160 1630 aa21.06■□□□□ 0.96
LINC00538-201ENST00000626109 UNC13AQ9UPW8 1703 aa20.96■□□□□ 0.95
LINC00538-201ENST00000626109 SHROOM4Q9ULL8 1493 aa20.88■□□□□ 0.93
LINC00538-201ENST00000626109 BICRAQ9NZM4 1560 aa20.79■□□□□ 0.92
LINC00538-201ENST00000626109 PABPN1Q86U42 306 aaKnown RBP eCLIP20.76■□□□□ 0.91
LINC00538-201ENST00000626109 PLPPR3Q6T4P5 718 aa20.59■□□□□ 0.89
LINC00538-201ENST00000626109 DAXXQ9UER7 740 aaPredicted RBP20.56■□□□□ 0.88
LINC00538-201ENST00000626109 RTN4Q9NQC3 1192 aaKnown RBP20.44■□□□□ 0.86
LINC00538-201ENST00000626109 CECR2Q9BXF3 1484 aa20.27■□□□□ 0.84
LINC00538-201ENST00000626109 EIF4G1Q04637 1599 aaKnown RBP20.23■□□□□ 0.83
LINC00538-201ENST00000626109 NCBP3Q53F19 620 aaKnown RBP20.21■□□□□ 0.83
LINC00538-201ENST00000626109 BAZ1AQ9NRL2 1556 aaPredicted RBP20.21■□□□□ 0.83
LINC00538-201ENST00000626109 SMARCA4P51532 1647 aa20.17■□□□□ 0.82
LINC00538-201ENST00000626109 MROH2BQ7Z745 1585 aa20.11■□□□□ 0.81
LINC00538-201ENST00000626109 CC2D2AQ9P2K1 1620 aa20.04■□□□□ 0.8
LINC00538-201ENST00000626109 RSF1Q96T23 1441 aaPredicted RBP20.03■□□□□ 0.8
LINC00538-201ENST00000626109 SMARCA2P51531 1590 aa19.97■□□□□ 0.79
LINC00538-201ENST00000626109 ATAD2BQ9ULI0 1458 aa19.95■□□□□ 0.78
LINC00538-201ENST00000626109 PEG3Q9GZU2 1588 aa19.95■□□□□ 0.78
LINC00538-201ENST00000626109 AMER1Q5JTC6 1135 aaPredicted RBP19.92■□□□□ 0.78
LINC00538-201ENST00000626109 WIZO95785 1651 aa19.91■□□□□ 0.78
LINC00538-201ENST00000626109 DNAJC5BQ9UF47 199 aa19.91■□□□□ 0.78
LINC00538-201ENST00000626109 AEBP2Q6ZN18 517 aaPredicted RBP19.88■□□□□ 0.77
LINC00538-201ENST00000626109 NCAPD3P42695 1498 aa19.87■□□□□ 0.77
LINC00538-201ENST00000626109 SUPT5HO00267 1087 aaKnown RBP19.85■□□□□ 0.77
LINC00538-201ENST00000626109 BAZ1BQ9UIG0 1483 aaKnown RBP19.83■□□□□ 0.77
LINC00538-201ENST00000626109 HMGXB3Q12766 1538 aa19.83■□□□□ 0.77
LINC00538-201ENST00000626109 TOP2AP11388 1531 aaKnown RBP19.75■□□□□ 0.75
LINC00538-201ENST00000626109 KCNA4P22459 653 aa19.7■□□□□ 0.74
LINC00538-201ENST00000626109 TTBK1Q5TCY1 1321 aaPredicted RBP19.68■□□□□ 0.74
LINC00538-201ENST00000626109 PRKCSHP14314 528 aaPredicted RBP19.66■□□□□ 0.74
LINC00538-201ENST00000626109 MYT1Q01538 1121 aa19.6■□□□□ 0.73
LINC00538-201ENST00000626109 CSRNP3Q8WYN3 585 aa19.57■□□□□ 0.72
LINC00538-201ENST00000626109 APLP2Q06481 763 aa19.54■□□□□ 0.72
LINC00538-201ENST00000626109 PELP1Q8IZL8 1130 aaKnown RBP19.51■□□□□ 0.71
LINC00538-201ENST00000626109 CCDC88BA6NC98 1476 aa19.49■□□□□ 0.71
LINC00538-201ENST00000626109 ARXQ96QS3 562 aa19.39■□□□□ 0.69
LINC00538-201ENST00000626109 PHF23Q9BUL5 403 aaPredicted RBP19.39■□□□□ 0.69
LINC00538-201ENST00000626109 ERICH6Q7L0X2 663 aa19.35■□□□□ 0.69
LINC00538-201ENST00000626109 CADPSQ9ULU8 1353 aa19.33■□□□□ 0.68
LINC00538-201ENST00000626109 LAMC3Q9Y6N6 1575 aa19.3■□□□□ 0.68
LINC00538-201ENST00000626109 CFTRP13569 1480 aa19.29■□□□□ 0.68
LINC00538-201ENST00000626109 NESP48681 1621 aa19.27■□□□□ 0.68
LINC00538-201ENST00000626109 TIMELESSQ9UNS1 1208 aa19.27■□□□□ 0.67
LINC00538-201ENST00000626109 PRDM2Q13029 1718 aa19.18■□□□□ 0.66
LINC00538-201ENST00000626109 PDS5BQ9NTI5 1447 aa19.17■□□□□ 0.66
LINC00538-201ENST00000626109 FANCD2Q9BXW9 1451 aa19.11■□□□□ 0.65
LINC00538-201ENST00000626109 ERCC6Q03468 1493 aa19.09■□□□□ 0.65
LINC00538-201ENST00000626109 CEP164Q9UPV0 1460 aa19.07■□□□□ 0.64
LINC00538-201ENST00000626109 KIF21AQ7Z4S6 1674 aa19.06■□□□□ 0.64
LINC00538-201ENST00000626109 TULP1O00294 542 aaPredicted RBP18.98■□□□□ 0.63
LINC00538-201ENST00000626109 TAOK2Q9UL54 1235 aa18.97■□□□□ 0.63
LINC00538-201ENST00000626109 MRC2Q9UBG0 1479 aa18.95■□□□□ 0.62
LINC00538-201ENST00000626109 RANGAP1P46060 587 aaPredicted RBP18.93■□□□□ 0.62
LINC00538-201ENST00000626109 ABCC8Q09428 1581 aa18.92■□□□□ 0.62
LINC00538-201ENST00000626109 THOC2Q8NI27 1593 aaKnown RBP18.9■□□□□ 0.62
LINC00538-201ENST00000626109 WRNQ14191 1432 aaPredicted RBP eCLIP18.9■□□□□ 0.62
LINC00538-201ENST00000626109 URB2Q14146 1524 aaKnown RBP18.88■□□□□ 0.61
LINC00538-201ENST00000626109 DNMBPQ6XZF7 1577 aa18.87■□□□□ 0.61
LINC00538-201ENST00000626109 WDR62O43379 1518 aa18.86■□□□□ 0.61
LINC00538-201ENST00000626109 CUX1P39880 1505 aa18.85■□□□□ 0.61
LINC00538-201ENST00000626109 TOPBP1Q92547 1522 aa18.84■□□□□ 0.61
LINC00538-201ENST00000626109 SYNJ1O43426 1573 aa18.81■□□□□ 0.6
LINC00538-201ENST00000626109 HOMEZQ8IX15 550 aa18.8■□□□□ 0.6
LINC00538-201ENST00000626109 TOP2BQ02880 1626 aa18.8■□□□□ 0.6
LINC00538-201ENST00000626109 BIVM-ERCC5R4GMW8 1640 aa18.79■□□□□ 0.6
LINC00538-201ENST00000626109 TRIM41Q8WV44 630 aa18.74■□□□□ 0.59
LINC00538-201ENST00000626109 FGD5Q6ZNL6 1462 aa18.73■□□□□ 0.59
LINC00538-201ENST00000626109 CUX2O14529 1486 aa18.72■□□□□ 0.59
LINC00538-201ENST00000626109 POLA1P09884 1462 aaPredicted RBP18.72■□□□□ 0.59
LINC00538-201ENST00000626109 BCANQ96GW7 911 aa18.7■□□□□ 0.58
LINC00538-201ENST00000626109 TPRNQ4KMQ1 711 aa18.68■□□□□ 0.58
LINC00538-201ENST00000626109 SOGA1O94964 1423 aa18.65■□□□□ 0.58
LINC00538-201ENST00000626109 IFT140Q96RY7 1462 aa18.64■□□□□ 0.57
LINC00538-201ENST00000626109 RAD54L2Q9Y4B4 1467 aa18.62■□□□□ 0.57
LINC00538-201ENST00000626109 TARBP1Q13395 1621 aaKnown RBP18.59■□□□□ 0.57
LINC00538-201ENST00000626109 KLHL34Q8N239 644 aa18.57■□□□□ 0.56
LINC00538-201ENST00000626109 ABCA10Q8WWZ4 1543 aa18.57■□□□□ 0.56
LINC00538-201ENST00000626109 WDR97A6NE52 1622 aa18.55■□□□□ 0.56
LINC00538-201ENST00000626109 SLC4A1APQ9BWU0 796 aaKnown RBP18.53■□□□□ 0.56
LINC00538-201ENST00000626109 ZNF608Q9ULD9 1512 aaPredicted RBP18.5■□□□□ 0.55
LINC00538-201ENST00000626109 PODXL2Q9NZ53 605 aa18.49■□□□□ 0.55
LINC00538-201ENST00000626109 TDRD9Q8NDG6 1382 aaKnown RBP18.49■□□□□ 0.55
LINC00538-201ENST00000626109 KIF27Q86VH2 1401 aa18.48■□□□□ 0.55
LINC00538-201ENST00000626109 EIF4G3O43432 1585 aaKnown RBP18.46■□□□□ 0.55
LINC00538-201ENST00000626109 ABCA5Q8WWZ7 1642 aa18.45■□□□□ 0.54
LINC00538-201ENST00000626109 AQRO60306 1485 aaKnown RBP eCLIP18.45■□□□□ 0.54
LINC00538-201ENST00000626109 GAPVD1Q14C86 1478 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms