RNA–Protein interactions for RNA: ENST00000621323.4

PDE4D-227, Transcript of phosphodiesterase 4D, humanhuman

TSL 3

Gene PDE4D, Length 709 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDE4D-227ENST00000621323 AEBP2Q6ZN18 517 aaPredicted RBP20.22■□□□□ 0.83
PDE4D-227ENST00000621323 CHIC1Q5VXU3 224 aa18.78■□□□□ 0.6
PDE4D-227ENST00000621323 SENP3Q9H4L4 574 aaPredicted RBP17.29■□□□□ 0.36
PDE4D-227ENST00000621323 PHF23Q9BUL5 403 aaPredicted RBP16.99■□□□□ 0.31
PDE4D-227ENST00000621323 NISCHQ9Y2I1 1504 aa16.79■□□□□ 0.28
PDE4D-227ENST00000621323 POTEDQ86YR6 584 aa16.74■□□□□ 0.27
PDE4D-227ENST00000621323 FOXD1Q16676 465 aa16.3■□□□□ 0.2
PDE4D-227ENST00000621323 ABCC9O60706 1549 aa15.98■□□□□ 0.15
PDE4D-227ENST00000621323 DNAJC5BQ9UF47 199 aa15.61■□□□□ 0.09
PDE4D-227ENST00000621323 MSH5O43196 834 aa15.5■□□□□ 0.07
PDE4D-227ENST00000621323 CCDC180Q9P1Z9 1646 aa15.31■□□□□ 0.04
PDE4D-227ENST00000621323 PIAS4Q8N2W9 510 aaPredicted RBP15.02■□□□□ -0
PDE4D-227ENST00000621323 PLPPR3Q6T4P5 718 aa14.98□□□□□ -0.01
PDE4D-227ENST00000621323 RB1CC1Q8TDY2 1594 aa14.87□□□□□ -0.03
PDE4D-227ENST00000621323 PABPN1Q86U42 306 aaKnown RBP eCLIP14.75□□□□□ -0.05
PDE4D-227ENST00000621323 DNAJC5Q9H3Z4 198 aa14.73□□□□□ -0.05
PDE4D-227ENST00000621323 NACADO15069 1562 aa14.63□□□□□ -0.07
PDE4D-227ENST00000621323 PPP6R1Q9UPN7 881 aa14.58□□□□□ -0.08
PDE4D-227ENST00000621323 BICRAQ9NZM4 1560 aa14.56□□□□□ -0.08
PDE4D-227ENST00000621323 UNC13AQ9UPW8 1703 aa14.55□□□□□ -0.08
PDE4D-227ENST00000621323 ADRA2BP18089 450 aa14.49□□□□□ -0.09
PDE4D-227ENST00000621323 CECR2Q9BXF3 1484 aa14.45□□□□□ -0.1
PDE4D-227ENST00000621323 CC2D2AQ9P2K1 1620 aa14.39□□□□□ -0.11
PDE4D-227ENST00000621323 DCAF8L2P0C7V8 631 aa14.31□□□□□ -0.12
PDE4D-227ENST00000621323 MYO15BQ96JP2 1530 aa14.25□□□□□ -0.13
PDE4D-227ENST00000621323 SHROOM4Q9ULL8 1493 aa14.25□□□□□ -0.13
PDE4D-227ENST00000621323 EIF4G1Q04637 1599 aaKnown RBP14.22□□□□□ -0.13
PDE4D-227ENST00000621323 CUX2O14529 1486 aa14.02□□□□□ -0.16
PDE4D-227ENST00000621323 SCRIBQ14160 1630 aa13.94□□□□□ -0.18
PDE4D-227ENST00000621323 CACNB1Q02641 598 aaPredicted RBP13.93□□□□□ -0.18
PDE4D-227ENST00000621323 DCAF1Q9Y4B6 1507 aa13.83□□□□□ -0.2
PDE4D-227ENST00000621323 ZCCHC6Q5VYS8 1495 aaKnown RBP13.82□□□□□ -0.2
PDE4D-227ENST00000621323 ERCC6Q03468 1493 aa13.79□□□□□ -0.2
PDE4D-227ENST00000621323 TRIM41Q8WV44 630 aa13.78□□□□□ -0.2
PDE4D-227ENST00000621323 MAPK8IP2Q13387 824 aaPredicted RBP13.6□□□□□ -0.23
PDE4D-227ENST00000621323 DMRT2Q9Y5R5 561 aa13.58□□□□□ -0.24
PDE4D-227ENST00000621323 THOC2Q8NI27 1593 aaKnown RBP13.58□□□□□ -0.24
PDE4D-227ENST00000621323 NESP48681 1621 aa13.57□□□□□ -0.24
PDE4D-227ENST00000621323 NCAPD3P42695 1498 aa13.55□□□□□ -0.24
PDE4D-227ENST00000621323 KCNA4P22459 653 aa13.51□□□□□ -0.25
PDE4D-227ENST00000621323 ATAD2BQ9ULI0 1458 aa13.43□□□□□ -0.26
PDE4D-227ENST00000621323 SMARCA2P51531 1590 aa13.41□□□□□ -0.26
PDE4D-227ENST00000621323 HMGXB3Q12766 1538 aa13.39□□□□□ -0.27
PDE4D-227ENST00000621323 EHMT2Q96KQ7 1210 aa13.34□□□□□ -0.27
PDE4D-227ENST00000621323 KIF21AQ7Z4S6 1674 aa13.32□□□□□ -0.28
PDE4D-227ENST00000621323 LAMC3Q9Y6N6 1575 aa13.3□□□□□ -0.28
PDE4D-227ENST00000621323 BAZ1AQ9NRL2 1556 aaPredicted RBP13.29□□□□□ -0.28
PDE4D-227ENST00000621323 PPP4R3CPQ6ZMV5 832 aa13.26□□□□□ -0.29
PDE4D-227ENST00000621323 SMARCA4P51532 1647 aa13.24□□□□□ -0.29
PDE4D-227ENST00000621323 PDS5BQ9NTI5 1447 aa13.23□□□□□ -0.29
PDE4D-227ENST00000621323 BAZ1BQ9UIG0 1483 aaKnown RBP13.23□□□□□ -0.29
PDE4D-227ENST00000621323 WDR62O43379 1518 aa13.22□□□□□ -0.29
PDE4D-227ENST00000621323 MRC2Q9UBG0 1479 aa13.21□□□□□ -0.3
PDE4D-227ENST00000621323 DCAF8L1A6NGE4 600 aa13.19□□□□□ -0.3
PDE4D-227ENST00000621323 OSCARQ8IYS5 282 aa13.19□□□□□ -0.3
PDE4D-227ENST00000621323 RIMBP3CA6NJZ7 1639 aa13.18□□□□□ -0.3
PDE4D-227ENST00000621323 RIMBP3BA6NNM3 1639 aa13.18□□□□□ -0.3
PDE4D-227ENST00000621323 RIMBP3Q9UFD9 1639 aa13.18□□□□□ -0.3
PDE4D-227ENST00000621323 RNF39Q9H2S5 420 aa13.17□□□□□ -0.3
PDE4D-227ENST00000621323 NCBP3Q53F19 620 aaKnown RBP13.14□□□□□ -0.31
PDE4D-227ENST00000621323 PEG3Q9GZU2 1588 aa13.13□□□□□ -0.31
PDE4D-227ENST00000621323 SCAF1Q9H7N4 1312 aaKnown RBP13.12□□□□□ -0.31
PDE4D-227ENST00000621323 ARHGEF11O15085 1522 aa13.08□□□□□ -0.31
PDE4D-227ENST00000621323 CADPSQ9ULU8 1353 aa13.08□□□□□ -0.31
PDE4D-227ENST00000621323 SLC4A1APQ9BWU0 796 aaKnown RBP13.04□□□□□ -0.32
PDE4D-227ENST00000621323 CEP164Q9UPV0 1460 aa13□□□□□ -0.33
PDE4D-227ENST00000621323 MROH2BQ7Z745 1585 aa12.96□□□□□ -0.33
PDE4D-227ENST00000621323 TRHP20396 242 aaPredicted RBP12.96□□□□□ -0.33
PDE4D-227ENST00000621323 CYB5RLQ6IPT4 315 aa12.95□□□□□ -0.34
PDE4D-227ENST00000621323 ARAP1Q96P48 1450 aa12.95□□□□□ -0.34
PDE4D-227ENST00000621323 FANCD2Q9BXW9 1451 aa12.95□□□□□ -0.34
PDE4D-227ENST00000621323 POTEHQ6S545 545 aa12.93□□□□□ -0.34
PDE4D-227ENST00000621323 URB2Q14146 1524 aaKnown RBP12.93□□□□□ -0.34
PDE4D-227ENST00000621323 C1QBPQ07021 282 aaKnown RBP12.88□□□□□ -0.35
PDE4D-227ENST00000621323 ZNF608Q9ULD9 1512 aaPredicted RBP12.88□□□□□ -0.35
PDE4D-227ENST00000621323 NPM3O75607 178 aaKnown RBP12.83□□□□□ -0.36
PDE4D-227ENST00000621323 CFTRP13569 1480 aa12.83□□□□□ -0.36
PDE4D-227ENST00000621323 RSF1Q96T23 1441 aaPredicted RBP12.78□□□□□ -0.36
PDE4D-227ENST00000621323 IFT140Q96RY7 1462 aa12.78□□□□□ -0.36
PDE4D-227ENST00000621323 CNKSR2Q8WXI2 1034 aa12.77□□□□□ -0.37
PDE4D-227ENST00000621323 EIF4G3O43432 1585 aaKnown RBP12.74□□□□□ -0.37
PDE4D-227ENST00000621323 CHD1O14646 1710 aa12.73□□□□□ -0.37
PDE4D-227ENST00000621323 WIZO95785 1651 aa12.73□□□□□ -0.37
PDE4D-227ENST00000621323 CSRNP3Q8WYN3 585 aa12.72□□□□□ -0.37
PDE4D-227ENST00000621323 HOXD11P31277 338 aaPredicted RBP12.7□□□□□ -0.38
PDE4D-227ENST00000621323 ILDR1Q86SU0 546 aaPredicted RBP12.69□□□□□ -0.38
PDE4D-227ENST00000621323 TOPBP1Q92547 1522 aa12.64□□□□□ -0.39
PDE4D-227ENST00000621323 AQRO60306 1485 aaKnown RBP eCLIP12.64□□□□□ -0.39
PDE4D-227ENST00000621323 CLASP1Q7Z460 1538 aa12.63□□□□□ -0.39
PDE4D-227ENST00000621323 TARBP1Q13395 1621 aaKnown RBP12.59□□□□□ -0.39
PDE4D-227ENST00000621323 FBLN2P98095 1184 aa12.58□□□□□ -0.4
PDE4D-227ENST00000621323 PRDM2Q13029 1718 aa12.56□□□□□ -0.4
PDE4D-227ENST00000621323 TOP2AP11388 1531 aaKnown RBP12.54□□□□□ -0.4
PDE4D-227ENST00000621323 RNF216Q9NWF9 866 aaPredicted RBP12.53□□□□□ -0.4
PDE4D-227ENST00000621323 DNMBPQ6XZF7 1577 aa12.52□□□□□ -0.4
PDE4D-227ENST00000621323 GAPVD1Q14C86 1478 aa12.51□□□□□ -0.41
PDE4D-227ENST00000621323 SNAPC4Q5SXM2 1469 aa12.5□□□□□ -0.41
PDE4D-227ENST00000621323 SYNJ1O43426 1573 aa12.48□□□□□ -0.41
PDE4D-227ENST00000621323 ABCC8Q09428 1581 aa12.48□□□□□ -0.41
PDE4D-227ENST00000621323 POLA1P09884 1462 aaPredicted RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms