RNA–Protein interactions for RNA: ENST00000612688.1

PPP4R3B-204, Transcript of protein phosphatase 4 regulatory subunit 3B, humanhuman

TSL 2

Gene PPP4R3B, Length 2,981 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3B-204ENST00000612688 NISCHQ9Y2I1 1504 aa25.1■■□□□ 1.61
PPP4R3B-204ENST00000612688 CCDC180Q9P1Z9 1646 aa21.59■■□□□ 1.05
PPP4R3B-204ENST00000612688 DCAF8L2P0C7V8 631 aa21.48■■□□□ 1.03
PPP4R3B-204ENST00000612688 SHROOM4Q9ULL8 1493 aa21.12■□□□□ 0.97
PPP4R3B-204ENST00000612688 ZCCHC6Q5VYS8 1495 aaKnown RBP21.03■□□□□ 0.96
PPP4R3B-204ENST00000612688 ABCC9O60706 1549 aa21■□□□□ 0.95
PPP4R3B-204ENST00000612688 DCAF1Q9Y4B6 1507 aa20.47■□□□□ 0.87
PPP4R3B-204ENST00000612688 SUPT5HO00267 1087 aaKnown RBP20.37■□□□□ 0.85
PPP4R3B-204ENST00000612688 SCRIBQ14160 1630 aa20.31■□□□□ 0.84
PPP4R3B-204ENST00000612688 NACADO15069 1562 aa20.23■□□□□ 0.83
PPP4R3B-204ENST00000612688 MYO15BQ96JP2 1530 aa20.16■□□□□ 0.82
PPP4R3B-204ENST00000612688 RB1CC1Q8TDY2 1594 aa20.13■□□□□ 0.81
PPP4R3B-204ENST00000612688 PABPN1Q86U42 306 aaKnown RBP eCLIP20.01■□□□□ 0.79
PPP4R3B-204ENST00000612688 CECR2Q9BXF3 1484 aa19.73■□□□□ 0.75
PPP4R3B-204ENST00000612688 UNC13AQ9UPW8 1703 aa19.71■□□□□ 0.75
PPP4R3B-204ENST00000612688 RSF1Q96T23 1441 aaPredicted RBP19.61■□□□□ 0.73
PPP4R3B-204ENST00000612688 BICRAQ9NZM4 1560 aa19.55■□□□□ 0.72
PPP4R3B-204ENST00000612688 MROH2BQ7Z745 1585 aa19.53■□□□□ 0.72
PPP4R3B-204ENST00000612688 PPARGC1BQ86YN6 1023 aaKnown RBP19.5■□□□□ 0.71
PPP4R3B-204ENST00000612688 HRCP23327 699 aa19.45■□□□□ 0.7
PPP4R3B-204ENST00000612688 PCGF6Q9BYE7 350 aa19.4■□□□□ 0.7
PPP4R3B-204ENST00000612688 CHIC1Q5VXU3 224 aa19.38■□□□□ 0.69
PPP4R3B-204ENST00000612688 WIZO95785 1651 aa19.36■□□□□ 0.69
PPP4R3B-204ENST00000612688 BAZ1AQ9NRL2 1556 aaPredicted RBP19.34■□□□□ 0.69
PPP4R3B-204ENST00000612688 SMARCA4P51532 1647 aa19.27■□□□□ 0.68
PPP4R3B-204ENST00000612688 LOC105371045A0A1W2PR82 267 aa19.19■□□□□ 0.66
PPP4R3B-204ENST00000612688 ATAD2BQ9ULI0 1458 aa19.03■□□□□ 0.64
PPP4R3B-204ENST00000612688 EIF4G1Q04637 1599 aaKnown RBP19.02■□□□□ 0.63
PPP4R3B-204ENST00000612688 EHMT2Q96KQ7 1210 aa19.01■□□□□ 0.63
PPP4R3B-204ENST00000612688 TOP2AP11388 1531 aaKnown RBP18.99■□□□□ 0.63
PPP4R3B-204ENST00000612688 CCDC88BA6NC98 1476 aa18.98■□□□□ 0.63
PPP4R3B-204ENST00000612688 BAZ1BQ9UIG0 1483 aaKnown RBP18.97■□□□□ 0.63
PPP4R3B-204ENST00000612688 TRIM41Q8WV44 630 aa18.96■□□□□ 0.63
PPP4R3B-204ENST00000612688 FAM9AQ8IZU1 332 aaPredicted RBP18.9■□□□□ 0.62
PPP4R3B-204ENST00000612688 SMARCA2P51531 1590 aa18.89■□□□□ 0.62
PPP4R3B-204ENST00000612688 PEG3Q9GZU2 1588 aa18.83■□□□□ 0.61
PPP4R3B-204ENST00000612688 PELP1Q8IZL8 1130 aaKnown RBP18.8■□□□□ 0.6
PPP4R3B-204ENST00000612688 CC2D2AQ9P2K1 1620 aa18.77■□□□□ 0.6
PPP4R3B-204ENST00000612688 NCAPD3P42695 1498 aa18.76■□□□□ 0.59
PPP4R3B-204ENST00000612688 DNAJC5BQ9UF47 199 aa18.73■□□□□ 0.59
PPP4R3B-204ENST00000612688 ABCC8Q09428 1581 aa18.71■□□□□ 0.59
PPP4R3B-204ENST00000612688 SCAF1Q9H7N4 1312 aaKnown RBP18.68■□□□□ 0.58
PPP4R3B-204ENST00000612688 HMGXB3Q12766 1538 aa18.63■□□□□ 0.57
PPP4R3B-204ENST00000612688 TRIM26Q12899 539 aaPredicted RBP18.55■□□□□ 0.56
PPP4R3B-204ENST00000612688 WRNQ14191 1432 aaPredicted RBP eCLIP18.48■□□□□ 0.55
PPP4R3B-204ENST00000612688 CADPSQ9ULU8 1353 aa18.42■□□□□ 0.54
PPP4R3B-204ENST00000612688 NESP48681 1621 aa18.42■□□□□ 0.54
PPP4R3B-204ENST00000612688 SOGA1O94964 1423 aa18.39■□□□□ 0.53
PPP4R3B-204ENST00000612688 CFTRP13569 1480 aa18.39■□□□□ 0.53
PPP4R3B-204ENST00000612688 TTBK1Q5TCY1 1321 aaPredicted RBP18.38■□□□□ 0.53
PPP4R3B-204ENST00000612688 SYNJ1O43426 1573 aa18.35■□□□□ 0.53
PPP4R3B-204ENST00000612688 RUSC2Q8N2Y8 1516 aa18.34■□□□□ 0.53
PPP4R3B-204ENST00000612688 CSRNP3Q8WYN3 585 aa18.25■□□□□ 0.51
PPP4R3B-204ENST00000612688 RANGAP1P46060 587 aaPredicted RBP18.24■□□□□ 0.51
PPP4R3B-204ENST00000612688 FANCD2Q9BXW9 1451 aa18.24■□□□□ 0.51
PPP4R3B-204ENST00000612688 UBTFP17480 764 aaKnown RBP18.23■□□□□ 0.51
PPP4R3B-204ENST00000612688 CUX1P39880 1505 aa18.21■□□□□ 0.51
PPP4R3B-204ENST00000612688 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.17■□□□□ 0.5
PPP4R3B-204ENST00000612688 ZEB1P37275 1124 aaPredicted RBP18.15■□□□□ 0.5
PPP4R3B-204ENST00000612688 NEUROD1Q13562 356 aa18.15■□□□□ 0.5
PPP4R3B-204ENST00000612688 TOP2BQ02880 1626 aa18.14■□□□□ 0.49
PPP4R3B-204ENST00000612688 GTF3C3Q9Y5Q9 886 aa18.12■□□□□ 0.49
PPP4R3B-204ENST00000612688 CEP164Q9UPV0 1460 aa18.09■□□□□ 0.49
PPP4R3B-204ENST00000612688 PDS5BQ9NTI5 1447 aa18.08■□□□□ 0.49
PPP4R3B-204ENST00000612688 LAMC3Q9Y6N6 1575 aa18.06■□□□□ 0.48
PPP4R3B-204ENST00000612688 FGD5Q6ZNL6 1462 aa18.06■□□□□ 0.48
PPP4R3B-204ENST00000612688 ACIN1Q9UKV3 1341 aaKnown RBP18.05■□□□□ 0.48
PPP4R3B-204ENST00000612688 BIVM-ERCC5R4GMW8 1640 aa18.04■□□□□ 0.48
PPP4R3B-204ENST00000612688 PRDM2Q13029 1718 aa18.04■□□□□ 0.48
PPP4R3B-204ENST00000612688 RAD54L2Q9Y4B4 1467 aa18.03■□□□□ 0.48
PPP4R3B-204ENST00000612688 CUX2O14529 1486 aa18.02■□□□□ 0.48
PPP4R3B-204ENST00000612688 EEA1Q15075 1411 aa18.02■□□□□ 0.48
PPP4R3B-204ENST00000612688 CCER1Q8TC90 406 aaPredicted RBP18.01■□□□□ 0.47
PPP4R3B-204ENST00000612688 TOPBP1Q92547 1522 aa18■□□□□ 0.47
PPP4R3B-204ENST00000612688 MYT1Q01538 1121 aa17.99■□□□□ 0.47
PPP4R3B-204ENST00000612688 URB2Q14146 1524 aaKnown RBP17.99■□□□□ 0.47
PPP4R3B-204ENST00000612688 KIF27Q86VH2 1401 aa17.98■□□□□ 0.47
PPP4R3B-204ENST00000612688 KIF21AQ7Z4S6 1674 aa17.98■□□□□ 0.47
PPP4R3B-204ENST00000612688 ERCC6Q03468 1493 aa17.96■□□□□ 0.47
PPP4R3B-204ENST00000612688 RAPGEF2Q9Y4G8 1499 aa17.96■□□□□ 0.47
PPP4R3B-204ENST00000612688 POLA1P09884 1462 aaPredicted RBP17.95■□□□□ 0.46
PPP4R3B-204ENST00000612688 TDRD9Q8NDG6 1382 aaKnown RBP17.94■□□□□ 0.46
PPP4R3B-204ENST00000612688 GOLGA3Q08378 1498 aa17.93■□□□□ 0.46
PPP4R3B-204ENST00000612688 DNMBPQ6XZF7 1577 aa17.92■□□□□ 0.46
PPP4R3B-204ENST00000612688 YTHDC1Q96MU7 727 aaKnown RBP17.91■□□□□ 0.46
PPP4R3B-204ENST00000612688 CEP162Q5TB80 1403 aa17.9■□□□□ 0.46
PPP4R3B-204ENST00000612688 TNIKQ9UKE5 1360 aa17.88■□□□□ 0.45
PPP4R3B-204ENST00000612688 IGF1RP08069 1367 aa17.87■□□□□ 0.45
PPP4R3B-204ENST00000612688 CENPBP07199 599 aaPredicted RBP17.82■□□□□ 0.44
PPP4R3B-204ENST00000612688 CARMIL1Q5VZK9 1371 aa17.82■□□□□ 0.44
PPP4R3B-204ENST00000612688 MRC2Q9UBG0 1479 aa17.8■□□□□ 0.44
PPP4R3B-204ENST00000612688 PRXQ9BXM0 1461 aa17.78■□□□□ 0.44
PPP4R3B-204ENST00000612688 KIF21BO75037 1637 aa17.77■□□□□ 0.43
PPP4R3B-204ENST00000612688 P3H3Q8IVL6 736 aa17.76■□□□□ 0.43
PPP4R3B-204ENST00000612688 AQRO60306 1485 aaKnown RBP eCLIP17.76■□□□□ 0.431e-6■■□□□ 12.5
PPP4R3B-204ENST00000612688 ABCA10Q8WWZ4 1543 aa17.76■□□□□ 0.43
PPP4R3B-204ENST00000612688 CLIP1P30622 1438 aa17.76■□□□□ 0.43
PPP4R3B-204ENST00000612688 DIEXFQ68CQ4 756 aaKnown RBP17.76■□□□□ 0.43
PPP4R3B-204ENST00000612688 GAPVD1Q14C86 1478 aa17.71■□□□□ 0.43
PPP4R3B-204ENST00000612688 FBLN2P98095 1184 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms