RNA–Protein interactions for RNA: ENST00000600044.5

ZNF544-216, Transcript of zinc finger protein 544, humanhuman

APPRIS ALT2 TSL 4 BASIC

Gene ZNF544, Length 2,784 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF544-216ENST00000600044 NISCHQ9Y2I1 1504 aa16.24■□□□□ 0.19
ZNF544-216ENST00000600044 CCDC180Q9P1Z9 1646 aa14.46□□□□□ -0.09
ZNF544-216ENST00000600044 SHROOM4Q9ULL8 1493 aa13.69□□□□□ -0.22
ZNF544-216ENST00000600044 ABCC9O60706 1549 aa13.62□□□□□ -0.23
ZNF544-216ENST00000600044 ZCCHC6Q5VYS8 1495 aaKnown RBP13.61□□□□□ -0.23
ZNF544-216ENST00000600044 DCAF1Q9Y4B6 1507 aa13.59□□□□□ -0.23
ZNF544-216ENST00000600044 MYO15BQ96JP2 1530 aa13.58□□□□□ -0.24
ZNF544-216ENST00000600044 HRCP23327 699 aa13.49□□□□□ -0.25
ZNF544-216ENST00000600044 NACADO15069 1562 aa13.48□□□□□ -0.25
ZNF544-216ENST00000600044 SUPT5HO00267 1087 aaKnown RBP13.45□□□□□ -0.26
ZNF544-216ENST00000600044 DCAF8L2P0C7V8 631 aa13.41□□□□□ -0.26
ZNF544-216ENST00000600044 RB1CC1Q8TDY2 1594 aa13.4□□□□□ -0.26
ZNF544-216ENST00000600044 PPARGC1BQ86YN6 1023 aaKnown RBP13.3□□□□□ -0.28
ZNF544-216ENST00000600044 PCGF6Q9BYE7 350 aa13.27□□□□□ -0.28
ZNF544-216ENST00000600044 CHIC1Q5VXU3 224 aa13.23□□□□□ -0.29
ZNF544-216ENST00000600044 UNC13AQ9UPW8 1703 aa13.07□□□□□ -0.32
ZNF544-216ENST00000600044 SCRIBQ14160 1630 aa13□□□□□ -0.33
ZNF544-216ENST00000600044 LOC105371045A0A1W2PR82 267 aa12.96□□□□□ -0.33
ZNF544-216ENST00000600044 BICRAQ9NZM4 1560 aa12.95□□□□□ -0.34
ZNF544-216ENST00000600044 TRIM26Q12899 539 aaPredicted RBP12.83□□□□□ -0.36
ZNF544-216ENST00000600044 PELP1Q8IZL8 1130 aaKnown RBP12.78□□□□□ -0.36
ZNF544-216ENST00000600044 SCAF1Q9H7N4 1312 aaKnown RBP12.76□□□□□ -0.37
ZNF544-216ENST00000600044 PABPN1Q86U42 306 aaKnown RBP eCLIP12.68□□□□□ -0.38
ZNF544-216ENST00000600044 ZEB1P37275 1124 aaPredicted RBP12.64□□□□□ -0.39
ZNF544-216ENST00000600044 RSF1Q96T23 1441 aaPredicted RBP12.62□□□□□ -0.39
ZNF544-216ENST00000600044 BAZ1AQ9NRL2 1556 aaPredicted RBP12.59□□□□□ -0.39
ZNF544-216ENST00000600044 EIF4G1Q04637 1599 aaKnown RBP12.57□□□□□ -0.4
ZNF544-216ENST00000600044 SMARCA4P51532 1647 aa12.56□□□□□ -0.4
ZNF544-216ENST00000600044 PEG3Q9GZU2 1588 aa12.52□□□□□ -0.41
ZNF544-216ENST00000600044 CECR2Q9BXF3 1484 aa12.51□□□□□ -0.41
ZNF544-216ENST00000600044 SMARCA2P51531 1590 aa12.46□□□□□ -0.42
ZNF544-216ENST00000600044 MROH2BQ7Z745 1585 aa12.45□□□□□ -0.42
ZNF544-216ENST00000600044 FAM9AQ8IZU1 332 aaPredicted RBP12.45□□□□□ -0.42
ZNF544-216ENST00000600044 NEUROD1Q13562 356 aa12.44□□□□□ -0.42
ZNF544-216ENST00000600044 CC2D2AQ9P2K1 1620 aa12.43□□□□□ -0.42
ZNF544-216ENST00000600044 ACIN1Q9UKV3 1341 aaKnown RBP12.43□□□□□ -0.42
ZNF544-216ENST00000600044 EHMT2Q96KQ7 1210 aa12.42□□□□□ -0.42
ZNF544-216ENST00000600044 TRIM41Q8WV44 630 aa12.41□□□□□ -0.42
ZNF544-216ENST00000600044 HMGXB3Q12766 1538 aa12.4□□□□□ -0.42
ZNF544-216ENST00000600044 NCAPD3P42695 1498 aa12.4□□□□□ -0.43
ZNF544-216ENST00000600044 ATAD2BQ9ULI0 1458 aa12.39□□□□□ -0.43
ZNF544-216ENST00000600044 GTF3C3Q9Y5Q9 886 aa12.34□□□□□ -0.43
ZNF544-216ENST00000600044 WIZO95785 1651 aa12.34□□□□□ -0.43
ZNF544-216ENST00000600044 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.34□□□□□ -0.43
ZNF544-216ENST00000600044 TOP2AP11388 1531 aaKnown RBP12.3□□□□□ -0.44
ZNF544-216ENST00000600044 BAZ1BQ9UIG0 1483 aaKnown RBP12.29□□□□□ -0.44
ZNF544-216ENST00000600044 DIEXFQ68CQ4 756 aaKnown RBP12.25□□□□□ -0.45
ZNF544-216ENST00000600044 CCER1Q8TC90 406 aaPredicted RBP12.25□□□□□ -0.45
ZNF544-216ENST00000600044 MYT1Q01538 1121 aa12.21□□□□□ -0.45
ZNF544-216ENST00000600044 DNAJC5BQ9UF47 199 aa12.2□□□□□ -0.46
ZNF544-216ENST00000600044 CENPBP07199 599 aaPredicted RBP12.2□□□□□ -0.46
ZNF544-216ENST00000600044 CCDC88BA6NC98 1476 aa12.11□□□□□ -0.47
ZNF544-216ENST00000600044 TTBK1Q5TCY1 1321 aaPredicted RBP12.09□□□□□ -0.47
ZNF544-216ENST00000600044 ABCC8Q09428 1581 aa12.07□□□□□ -0.48
ZNF544-216ENST00000600044 YTHDC1Q96MU7 727 aaKnown RBP12.06□□□□□ -0.48
ZNF544-216ENST00000600044 LAMC3Q9Y6N6 1575 aa12.05□□□□□ -0.48
ZNF544-216ENST00000600044 PRDM2Q13029 1718 aa12.05□□□□□ -0.48
ZNF544-216ENST00000600044 ZNF316A6NFI3 1004 aaPredicted RBP12.03□□□□□ -0.48
ZNF544-216ENST00000600044 CFTRP13569 1480 aa12.01□□□□□ -0.49
ZNF544-216ENST00000600044 MIER1Q8N108 512 aa12□□□□□ -0.49
ZNF544-216ENST00000600044 CADPSQ9ULU8 1353 aa11.99□□□□□ -0.49
ZNF544-216ENST00000600044 SOGA1O94964 1423 aa11.96□□□□□ -0.49
ZNF544-216ENST00000600044 RUSC2Q8N2Y8 1516 aa11.93□□□□□ -0.5
ZNF544-216ENST00000600044 WRNQ14191 1432 aaPredicted RBP eCLIP11.93□□□□□ -0.59e-6■■■■■ 50.1
ZNF544-216ENST00000600044 PDS5BQ9NTI5 1447 aa11.91□□□□□ -0.5
ZNF544-216ENST00000600044 CEP162Q5TB80 1403 aa11.88□□□□□ -0.51
ZNF544-216ENST00000600044 NESP48681 1621 aa11.86□□□□□ -0.51
ZNF544-216ENST00000600044 CSRNP3Q8WYN3 585 aa11.86□□□□□ -0.51
ZNF544-216ENST00000600044 UBTFP17480 764 aaKnown RBP11.84□□□□□ -0.51
ZNF544-216ENST00000600044 FANCD2Q9BXW9 1451 aa11.84□□□□□ -0.51
ZNF544-216ENST00000600044 KIF21AQ7Z4S6 1674 aa11.83□□□□□ -0.52
ZNF544-216ENST00000600044 CEP164Q9UPV0 1460 aa11.82□□□□□ -0.52
ZNF544-216ENST00000600044 HNRNPUL2Q1KMD3 747 aaKnown RBP11.82□□□□□ -0.52
ZNF544-216ENST00000600044 TNIKQ9UKE5 1360 aa11.81□□□□□ -0.52
ZNF544-216ENST00000600044 SYNJ1O43426 1573 aa11.78□□□□□ -0.52
ZNF544-216ENST00000600044 THOC2Q8NI27 1593 aaKnown RBP11.78□□□□□ -0.52
ZNF544-216ENST00000600044 MRC2Q9UBG0 1479 aa11.77□□□□□ -0.52
ZNF544-216ENST00000600044 WDR62O43379 1518 aa11.76□□□□□ -0.53
ZNF544-216ENST00000600044 SUPT16HQ9Y5B9 1047 aaKnown RBP11.76□□□□□ -0.53
ZNF544-216ENST00000600044 DNMBPQ6XZF7 1577 aa11.76□□□□□ -0.53
ZNF544-216ENST00000600044 ERCC6Q03468 1493 aa11.76□□□□□ -0.53
ZNF544-216ENST00000600044 BIVM-ERCC5R4GMW8 1640 aa11.75□□□□□ -0.53
ZNF544-216ENST00000600044 EEA1Q15075 1411 aa11.74□□□□□ -0.53
ZNF544-216ENST00000600044 RANGAP1P46060 587 aaPredicted RBP11.73□□□□□ -0.53
ZNF544-216ENST00000600044 TOP2BQ02880 1626 aa11.72□□□□□ -0.53
ZNF544-216ENST00000600044 GOLGA3Q08378 1498 aa11.71□□□□□ -0.54
ZNF544-216ENST00000600044 TSHZ2Q9NRE2 1034 aa11.71□□□□□ -0.54
ZNF544-216ENST00000600044 URB2Q14146 1524 aaKnown RBP11.7□□□□□ -0.54
ZNF544-216ENST00000600044 TOPBP1Q92547 1522 aa11.7□□□□□ -0.54
ZNF544-216ENST00000600044 CUX1P39880 1505 aa11.69□□□□□ -0.54
ZNF544-216ENST00000600044 CUX2O14529 1486 aa11.69□□□□□ -0.54
ZNF544-216ENST00000600044 WDR97A6NE52 1622 aa11.66□□□□□ -0.54
ZNF544-216ENST00000600044 ANP32EQ9BTT0 268 aa11.65□□□□□ -0.54
ZNF544-216ENST00000600044 RAPGEF2Q9Y4G8 1499 aa11.64□□□□□ -0.55
ZNF544-216ENST00000600044 CLIP1P30622 1438 aa11.61□□□□□ -0.55
ZNF544-216ENST00000600044 CLSPNQ9HAW4 1339 aa11.6□□□□□ -0.55
ZNF544-216ENST00000600044 IFT140Q96RY7 1462 aa11.6□□□□□ -0.55
ZNF544-216ENST00000600044 KIF21BO75037 1637 aa11.59□□□□□ -0.55
ZNF544-216ENST00000600044 POLA1P09884 1462 aaPredicted RBP11.59□□□□□ -0.55
ZNF544-216ENST00000600044 FGD5Q6ZNL6 1462 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms