RNA–Protein interactions for RNA: ENST00000598229.1

LINC00343-205, long intergenic non-protein coding RNA 343, humanhuman

TSL 5

Gene LINC00343, Length 735 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00343-205ENST00000598229 AEBP2Q6ZN18 517 aaPredicted RBP30.08■■■□□ 2.41
LINC00343-205ENST00000598229 CHIC1Q5VXU3 224 aa28.67■■■□□ 2.18
LINC00343-205ENST00000598229 SENP3Q9H4L4 574 aaPredicted RBP25.79■■□□□ 1.72
LINC00343-205ENST00000598229 PHF23Q9BUL5 403 aaPredicted RBP25.39■■□□□ 1.66
LINC00343-205ENST00000598229 FOXD1Q16676 465 aa23.94■■□□□ 1.42
LINC00343-205ENST00000598229 NISCHQ9Y2I1 1504 aa23.82■■□□□ 1.4
LINC00343-205ENST00000598229 PLPPR3Q6T4P5 718 aa22.97■■□□□ 1.27
LINC00343-205ENST00000598229 MSH5O43196 834 aa22.51■■□□□ 1.19
LINC00343-205ENST00000598229 PIAS4Q8N2W9 510 aaPredicted RBP22.42■■□□□ 1.18
LINC00343-205ENST00000598229 PPP6R1Q9UPN7 881 aa22.34■■□□□ 1.17
LINC00343-205ENST00000598229 ADRA2BP18089 450 aa22.3■■□□□ 1.16
LINC00343-205ENST00000598229 ABCC9O60706 1549 aa22.01■■□□□ 1.11
LINC00343-205ENST00000598229 POTEDQ86YR6 584 aa21.83■■□□□ 1.09
LINC00343-205ENST00000598229 CCDC180Q9P1Z9 1646 aa21.52■■□□□ 1.04
LINC00343-205ENST00000598229 DNAJC5BQ9UF47 199 aa21.16■□□□□ 0.98
LINC00343-205ENST00000598229 RB1CC1Q8TDY2 1594 aa20.76■□□□□ 0.91
LINC00343-205ENST00000598229 SCAF1Q9H7N4 1312 aaKnown RBP20.56■□□□□ 0.88
LINC00343-205ENST00000598229 NACADO15069 1562 aa20.54■□□□□ 0.88
LINC00343-205ENST00000598229 PABPN1Q86U42 306 aaKnown RBP eCLIP20.45■□□□□ 0.86
LINC00343-205ENST00000598229 MAPK8IP2Q13387 824 aaPredicted RBP20.44■□□□□ 0.86
LINC00343-205ENST00000598229 DMRT2Q9Y5R5 561 aa20.43■□□□□ 0.86
LINC00343-205ENST00000598229 DCAF8L2P0C7V8 631 aa20.31■□□□□ 0.84
LINC00343-205ENST00000598229 MYO15BQ96JP2 1530 aa20.16■□□□□ 0.82
LINC00343-205ENST00000598229 BICRAQ9NZM4 1560 aa20.16■□□□□ 0.82
LINC00343-205ENST00000598229 UNC13AQ9UPW8 1703 aa20.13■□□□□ 0.81
LINC00343-205ENST00000598229 PPP4R3CPQ6ZMV5 832 aa20.08■□□□□ 0.81
LINC00343-205ENST00000598229 SHROOM4Q9ULL8 1493 aa19.93■□□□□ 0.78
LINC00343-205ENST00000598229 CECR2Q9BXF3 1484 aa19.92■□□□□ 0.78
LINC00343-205ENST00000598229 DNAJC5Q9H3Z4 198 aa19.86■□□□□ 0.77
LINC00343-205ENST00000598229 CC2D2AQ9P2K1 1620 aa19.84■□□□□ 0.77
LINC00343-205ENST00000598229 CNKSR2Q8WXI2 1034 aa19.75■□□□□ 0.75
LINC00343-205ENST00000598229 DCAF1Q9Y4B6 1507 aa19.7■□□□□ 0.74
LINC00343-205ENST00000598229 EIF4G1Q04637 1599 aaKnown RBP19.7■□□□□ 0.74
LINC00343-205ENST00000598229 HOXD11P31277 338 aaPredicted RBP19.69■□□□□ 0.74
LINC00343-205ENST00000598229 ZCCHC6Q5VYS8 1495 aaKnown RBP19.6■□□□□ 0.73
LINC00343-205ENST00000598229 DCAF8L1A6NGE4 600 aa19.56■□□□□ 0.72
LINC00343-205ENST00000598229 RNF216Q9NWF9 866 aaPredicted RBP19.56■□□□□ 0.72
LINC00343-205ENST00000598229 SCRIBQ14160 1630 aa19.52■□□□□ 0.72
LINC00343-205ENST00000598229 NCBP3Q53F19 620 aaKnown RBP19.41■□□□□ 0.7
LINC00343-205ENST00000598229 CACNB1Q02641 598 aaPredicted RBP19.25■□□□□ 0.67
LINC00343-205ENST00000598229 CUX2O14529 1486 aa19.23■□□□□ 0.67
LINC00343-205ENST00000598229 RNF39Q9H2S5 420 aa19.15■□□□□ 0.66
LINC00343-205ENST00000598229 ERCC6Q03468 1493 aa19.05■□□□□ 0.64
LINC00343-205ENST00000598229 NPM3O75607 178 aaKnown RBP19.02■□□□□ 0.64
LINC00343-205ENST00000598229 NCAPD3P42695 1498 aa19.02■□□□□ 0.63
LINC00343-205ENST00000598229 C1QBPQ07021 282 aaKnown RBP18.92■□□□□ 0.62
LINC00343-205ENST00000598229 ATAD2BQ9ULI0 1458 aa18.84■□□□□ 0.61
LINC00343-205ENST00000598229 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.76■□□□□ 0.59
LINC00343-205ENST00000598229 HMGXB3Q12766 1538 aa18.75■□□□□ 0.59
LINC00343-205ENST00000598229 NESP48681 1621 aa18.75■□□□□ 0.59
LINC00343-205ENST00000598229 SMARCA2P51531 1590 aa18.75■□□□□ 0.59
LINC00343-205ENST00000598229 TRIM41Q8WV44 630 aa18.66■□□□□ 0.58
LINC00343-205ENST00000598229 KCNA4P22459 653 aa18.65■□□□□ 0.58
LINC00343-205ENST00000598229 THOC2Q8NI27 1593 aaKnown RBP18.64■□□□□ 0.57
LINC00343-205ENST00000598229 SMARCA4P51532 1647 aa18.62■□□□□ 0.57
LINC00343-205ENST00000598229 BAZ1BQ9UIG0 1483 aaKnown RBP18.59■□□□□ 0.57
LINC00343-205ENST00000598229 LAMC3Q9Y6N6 1575 aa18.59■□□□□ 0.57
LINC00343-205ENST00000598229 PDS5BQ9NTI5 1447 aa18.56■□□□□ 0.56
LINC00343-205ENST00000598229 PEG3Q9GZU2 1588 aa18.51■□□□□ 0.55
LINC00343-205ENST00000598229 BAZ1AQ9NRL2 1556 aaPredicted RBP18.51■□□□□ 0.55
LINC00343-205ENST00000598229 KIF21AQ7Z4S6 1674 aa18.41■□□□□ 0.54
LINC00343-205ENST00000598229 CADPSQ9ULU8 1353 aa18.41■□□□□ 0.54
LINC00343-205ENST00000598229 MRC2Q9UBG0 1479 aa18.37■□□□□ 0.53
LINC00343-205ENST00000598229 OSCARQ8IYS5 282 aa18.34■□□□□ 0.53
LINC00343-205ENST00000598229 U3KPZ7 1027 aaPredicted RBP18.33■□□□□ 0.52
LINC00343-205ENST00000598229 WDR62O43379 1518 aa18.33■□□□□ 0.52
LINC00343-205ENST00000598229 MROH2BQ7Z745 1585 aa18.31■□□□□ 0.52
LINC00343-205ENST00000598229 CEP164Q9UPV0 1460 aa18.19■□□□□ 0.5
LINC00343-205ENST00000598229 FANCD2Q9BXW9 1451 aa18.14■□□□□ 0.49
LINC00343-205ENST00000598229 SLC4A2P04920 1241 aa18.13■□□□□ 0.49
LINC00343-205ENST00000598229 CFTRP13569 1480 aa18.07■□□□□ 0.48
LINC00343-205ENST00000598229 CAPN15O75808 1086 aa18.05■□□□□ 0.48
LINC00343-205ENST00000598229 SPINK5Q9NQ38 1064 aaPredicted RBP18.02■□□□□ 0.48
LINC00343-205ENST00000598229 URB2Q14146 1524 aaKnown RBP18■□□□□ 0.47
LINC00343-205ENST00000598229 APLP2Q06481 763 aa18■□□□□ 0.47
LINC00343-205ENST00000598229 RIMBP3CA6NJZ7 1639 aa18■□□□□ 0.47
LINC00343-205ENST00000598229 RIMBP3BA6NNM3 1639 aa18■□□□□ 0.47
LINC00343-205ENST00000598229 RIMBP3Q9UFD9 1639 aa18■□□□□ 0.47
LINC00343-205ENST00000598229 WIZO95785 1651 aa17.99■□□□□ 0.47
LINC00343-205ENST00000598229 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.95■□□□□ 0.46
LINC00343-205ENST00000598229 HNRNPUL2Q1KMD3 747 aaKnown RBP17.95■□□□□ 0.46
LINC00343-205ENST00000598229 ARHGEF11O15085 1522 aa17.93■□□□□ 0.46
LINC00343-205ENST00000598229 DSG3P32926 999 aa17.93■□□□□ 0.46
LINC00343-205ENST00000598229 CYB5RLQ6IPT4 315 aa17.89■□□□□ 0.45
LINC00343-205ENST00000598229 IFT140Q96RY7 1462 aa17.88■□□□□ 0.45
LINC00343-205ENST00000598229 ZNF608Q9ULD9 1512 aaPredicted RBP17.85■□□□□ 0.45
LINC00343-205ENST00000598229 TRHP20396 242 aaPredicted RBP17.83■□□□□ 0.44
LINC00343-205ENST00000598229 SAMD1Q6SPF0 538 aaPredicted RBP17.81■□□□□ 0.44
LINC00343-205ENST00000598229 RSF1Q96T23 1441 aaPredicted RBP17.81■□□□□ 0.44
LINC00343-205ENST00000598229 ZNF219Q9P2Y4 722 aaPredicted RBP17.8■□□□□ 0.44
LINC00343-205ENST00000598229 TOP2AP11388 1531 aaKnown RBP17.8■□□□□ 0.44
LINC00343-205ENST00000598229 ABCC8Q09428 1581 aa17.74■□□□□ 0.43
LINC00343-205ENST00000598229 TOPBP1Q92547 1522 aa17.72■□□□□ 0.43
LINC00343-205ENST00000598229 ARAP1Q96P48 1450 aa17.72■□□□□ 0.43
LINC00343-205ENST00000598229 EIF4G3O43432 1585 aaKnown RBP17.67■□□□□ 0.42
LINC00343-205ENST00000598229 MYCNP04198 464 aaPredicted RBP17.67■□□□□ 0.42
LINC00343-205ENST00000598229 SLC4A1APQ9BWU0 796 aaKnown RBP17.67■□□□□ 0.42
LINC00343-205ENST00000598229 PRDM2Q13029 1718 aa17.67■□□□□ 0.42
LINC00343-205ENST00000598229 AQRO60306 1485 aaKnown RBP eCLIP17.65■□□□□ 0.42
LINC00343-205ENST00000598229 CCDC88BA6NC98 1476 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms