RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 NISCHQ9Y2I1 1504 aa24.77■■□□□ 1.56
VRK3-208ENST00000594104 CHIC1Q5VXU3 224 aa23.78■■□□□ 1.4
VRK3-208ENST00000594104 AEBP2Q6ZN18 517 aaPredicted RBP22.77■■□□□ 1.24
VRK3-208ENST00000594104 CCDC180Q9P1Z9 1646 aa21.29■■□□□ 1
VRK3-208ENST00000594104 PHF23Q9BUL5 403 aaPredicted RBP21.26■□□□□ 0.99
VRK3-208ENST00000594104 ZCCHC6Q5VYS8 1495 aaKnown RBP20.92■□□□□ 0.94
VRK3-208ENST00000594104 EHMT2Q96KQ7 1210 aa20.61■□□□□ 0.89
VRK3-208ENST00000594104 DCAF1Q9Y4B6 1507 aa20.56■□□□□ 0.88
VRK3-208ENST00000594104 SHROOM4Q9ULL8 1493 aa20.53■□□□□ 0.88
VRK3-208ENST00000594104 DCAF8L2P0C7V8 631 aa20.22■□□□□ 0.83
VRK3-208ENST00000594104 SLC24A1O60721 1099 aa20.19■□□□□ 0.82
VRK3-208ENST00000594104 SUPT5HO00267 1087 aaKnown RBP20.12■□□□□ 0.81
VRK3-208ENST00000594104 MYO15BQ96JP2 1530 aa20.1■□□□□ 0.81
VRK3-208ENST00000594104 PLPPR3Q6T4P5 718 aa20.06■□□□□ 0.8
VRK3-208ENST00000594104 NACADO15069 1562 aa19.75■□□□□ 0.75
VRK3-208ENST00000594104 KCNA4P22459 653 aa19.66■□□□□ 0.74
VRK3-208ENST00000594104 ABCC9O60706 1549 aa19.66■□□□□ 0.74
VRK3-208ENST00000594104 SCRIBQ14160 1630 aa19.59■□□□□ 0.73
VRK3-208ENST00000594104 RSF1Q96T23 1441 aaPredicted RBP19.46■□□□□ 0.71
VRK3-208ENST00000594104 CSRNP3Q8WYN3 585 aa19.46■□□□□ 0.71
VRK3-208ENST00000594104 RB1CC1Q8TDY2 1594 aa19.39■□□□□ 0.7
VRK3-208ENST00000594104 CECR2Q9BXF3 1484 aa19.15■□□□□ 0.66
VRK3-208ENST00000594104 RTN4Q9NQC3 1192 aaKnown RBP19.12■□□□□ 0.65
VRK3-208ENST00000594104 MROH2BQ7Z745 1585 aa19.12■□□□□ 0.65
VRK3-208ENST00000594104 BAZ1AQ9NRL2 1556 aaPredicted RBP19.08■□□□□ 0.65
VRK3-208ENST00000594104 ADRA2BP18089 450 aa18.96■□□□□ 0.63
VRK3-208ENST00000594104 WIZO95785 1651 aa18.95■□□□□ 0.62
VRK3-208ENST00000594104 TRIM41Q8WV44 630 aa18.94■□□□□ 0.62
VRK3-208ENST00000594104 SLC4A1APQ9BWU0 796 aaKnown RBP18.94■□□□□ 0.62
VRK3-208ENST00000594104 UNC13AQ9UPW8 1703 aa18.87■□□□□ 0.61
VRK3-208ENST00000594104 SMARCA4P51532 1647 aa18.87■□□□□ 0.61
VRK3-208ENST00000594104 AMER1Q5JTC6 1135 aaPredicted RBP18.87■□□□□ 0.61
VRK3-208ENST00000594104 LOC105371045A0A1W2PR82 267 aa18.86■□□□□ 0.61
VRK3-208ENST00000594104 TOP2AP11388 1531 aaKnown RBP18.84■□□□□ 0.61
VRK3-208ENST00000594104 SENP3Q9H4L4 574 aaPredicted RBP18.83■□□□□ 0.6
VRK3-208ENST00000594104 BICRAQ9NZM4 1560 aa18.75■□□□□ 0.59
VRK3-208ENST00000594104 EIF4G1Q04637 1599 aaKnown RBP18.73■□□□□ 0.59
VRK3-208ENST00000594104 HRCP23327 699 aa18.69■□□□□ 0.58
VRK3-208ENST00000594104 CCDC88BA6NC98 1476 aa18.67■□□□□ 0.58
VRK3-208ENST00000594104 PEG3Q9GZU2 1588 aa18.67■□□□□ 0.58
VRK3-208ENST00000594104 SMARCA2P51531 1590 aa18.65■□□□□ 0.58
VRK3-208ENST00000594104 PCGF6Q9BYE7 350 aa18.65■□□□□ 0.58
VRK3-208ENST00000594104 TRIM26Q12899 539 aaPredicted RBP18.59■□□□□ 0.57
VRK3-208ENST00000594104 PABPN1Q86U42 306 aaKnown RBP eCLIP18.58■□□□□ 0.56
VRK3-208ENST00000594104 FAM9AQ8IZU1 332 aaPredicted RBP18.51■□□□□ 0.55
VRK3-208ENST00000594104 ATAD2BQ9ULI0 1458 aa18.46■□□□□ 0.55
VRK3-208ENST00000594104 EEA1Q15075 1411 aa18.45■□□□□ 0.54
VRK3-208ENST00000594104 ABCC8Q09428 1581 aa18.37■□□□□ 0.53
VRK3-208ENST00000594104 BAZ1BQ9UIG0 1483 aaKnown RBP18.37■□□□□ 0.53
VRK3-208ENST00000594104 WRNQ14191 1432 aaPredicted RBP eCLIP18.29■□□□□ 0.52
VRK3-208ENST00000594104 ZEB1P37275 1124 aaPredicted RBP18.25■□□□□ 0.51
VRK3-208ENST00000594104 TNIKQ9UKE5 1360 aa18.25■□□□□ 0.51
VRK3-208ENST00000594104 PPP6R1Q9UPN7 881 aa18.24■□□□□ 0.51
VRK3-208ENST00000594104 NCAPD3P42695 1498 aa18.24■□□□□ 0.51
VRK3-208ENST00000594104 HMGXB3Q12766 1538 aa18.23■□□□□ 0.51
VRK3-208ENST00000594104 SOGA1O94964 1423 aa18.23■□□□□ 0.51
VRK3-208ENST00000594104 ZBTB22O15209 634 aa18.18■□□□□ 0.5
VRK3-208ENST00000594104 GOLGA3Q08378 1498 aa18.14■□□□□ 0.49
VRK3-208ENST00000594104 CEP162Q5TB80 1403 aa18.13■□□□□ 0.49
VRK3-208ENST00000594104 SYNJ1O43426 1573 aa18.12■□□□□ 0.49
VRK3-208ENST00000594104 NCBP3Q53F19 620 aaKnown RBP18.11■□□□□ 0.49
VRK3-208ENST00000594104 CEP164Q9UPV0 1460 aa18.09■□□□□ 0.49
VRK3-208ENST00000594104 RUSC2Q8N2Y8 1516 aa18.08■□□□□ 0.48
VRK3-208ENST00000594104 KIF21BO75037 1637 aa18.08■□□□□ 0.48
VRK3-208ENST00000594104 TOP2BQ02880 1626 aa18.05■□□□□ 0.48
VRK3-208ENST00000594104 UBTFP17480 764 aaKnown RBP18.03■□□□□ 0.48
VRK3-208ENST00000594104 BIVM-ERCC5R4GMW8 1640 aa18.01■□□□□ 0.47
VRK3-208ENST00000594104 PPARGC1BQ86YN6 1023 aaKnown RBP18■□□□□ 0.47
VRK3-208ENST00000594104 CFTRP13569 1480 aa17.98■□□□□ 0.47
VRK3-208ENST00000594104 PPP4R3CPQ6ZMV5 832 aa17.96■□□□□ 0.47
VRK3-208ENST00000594104 ERICH3Q5RHP9 1530 aa17.87■□□□□ 0.45
VRK3-208ENST00000594104 CLIP1P30622 1438 aa17.86■□□□□ 0.45
VRK3-208ENST00000594104 CUX1P39880 1505 aa17.85■□□□□ 0.45
VRK3-208ENST00000594104 PRXQ9BXM0 1461 aa17.84■□□□□ 0.45
VRK3-208ENST00000594104 RAPGEF2Q9Y4G8 1499 aa17.83■□□□□ 0.44
VRK3-208ENST00000594104 KIF27Q86VH2 1401 aa17.81■□□□□ 0.44
VRK3-208ENST00000594104 PRDM2Q13029 1718 aa17.81■□□□□ 0.44
VRK3-208ENST00000594104 CADPSQ9ULU8 1353 aa17.81■□□□□ 0.44
VRK3-208ENST00000594104 VPS8Q8N3P4 1428 aa17.81■□□□□ 0.44
VRK3-208ENST00000594104 NPM3O75607 178 aaKnown RBP17.79■□□□□ 0.44
VRK3-208ENST00000594104 PRKCSHP14314 528 aaPredicted RBP17.73■□□□□ 0.43
VRK3-208ENST00000594104 CCER1Q8TC90 406 aaPredicted RBP17.72■□□□□ 0.43
VRK3-208ENST00000594104 CC2D2AQ9P2K1 1620 aa17.7■□□□□ 0.42
VRK3-208ENST00000594104 APLP2Q06481 763 aa17.7■□□□□ 0.42
VRK3-208ENST00000594104 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.64■□□□□ 0.41
VRK3-208ENST00000594104 IGF1RP08069 1367 aa17.6■□□□□ 0.41
VRK3-208ENST00000594104 CUX2O14529 1486 aa17.58■□□□□ 0.4
VRK3-208ENST00000594104 ARAP1Q96P48 1450 aa17.57■□□□□ 0.4
VRK3-208ENST00000594104 FANCD2Q9BXW9 1451 aa17.57■□□□□ 0.4
VRK3-208ENST00000594104 FGD5Q6ZNL6 1462 aa17.55■□□□□ 0.4
VRK3-208ENST00000594104 TTBK1Q5TCY1 1321 aaPredicted RBP17.55■□□□□ 0.4
VRK3-208ENST00000594104 DNMBPQ6XZF7 1577 aa17.52■□□□□ 0.39
VRK3-208ENST00000594104 CARMIL1Q5VZK9 1371 aa17.51■□□□□ 0.39
VRK3-208ENST00000594104 ARHGAP35Q9NRY4 1499 aa17.47■□□□□ 0.39
VRK3-208ENST00000594104 FKBP8Q14318 412 aa17.47■□□□□ 0.39
VRK3-208ENST00000594104 LAMC3Q9Y6N6 1575 aa17.47■□□□□ 0.39
VRK3-208ENST00000594104 ABCA10Q8WWZ4 1543 aa17.47■□□□□ 0.39
VRK3-208ENST00000594104 MAP3K1Q13233 1512 aa17.46■□□□□ 0.39
VRK3-208ENST00000594104 TOPBP1Q92547 1522 aa17.44■□□□□ 0.38
VRK3-208ENST00000594104 RANGAP1P46060 587 aaPredicted RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms