RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 AEBP2Q6ZN18 517 aaPredicted RBP13.09□□□□□ -0.31
LIG3-211ENST00000588713 CHIC1Q5VXU3 224 aa12.37□□□□□ -0.43
LIG3-211ENST00000588713 SENP3Q9H4L4 574 aaPredicted RBP11.21□□□□□ -0.61
LIG3-211ENST00000588713 PHF23Q9BUL5 403 aaPredicted RBP11.06□□□□□ -0.64
LIG3-211ENST00000588713 FOXD1Q16676 465 aa10.44□□□□□ -0.74
LIG3-211ENST00000588713 ABCC9O60706 1549 aa10.38□□□□□ -0.75
LIG3-211ENST00000588713 DNAJC5BQ9UF47 199 aa10.38□□□□□ -0.75
LIG3-211ENST00000588713 NISCHQ9Y2I1 1504 aa10.3□□□□□ -0.76
LIG3-211ENST00000588713 DNAJC5Q9H3Z4 198 aa10.04□□□□□ -0.8
LIG3-211ENST00000588713 PLPPR3Q6T4P5 718 aa9.88□□□□□ -0.83
LIG3-211ENST00000588713 MSH5O43196 834 aa9.81□□□□□ -0.84
LIG3-211ENST00000588713 PIAS4Q8N2W9 510 aaPredicted RBP9.77□□□□□ -0.85
LIG3-211ENST00000588713 PPP6R1Q9UPN7 881 aa9.71□□□□□ -0.86
LIG3-211ENST00000588713 ADRA2BP18089 450 aa9.7□□□□□ -0.86
LIG3-211ENST00000588713 POTEDQ86YR6 584 aa9.68□□□□□ -0.86
LIG3-211ENST00000588713 PABPN1Q86U42 306 aaKnown RBP eCLIP9.58□□□□□ -0.88
LIG3-211ENST00000588713 CCDC180Q9P1Z9 1646 aa9.51□□□□□ -0.89
LIG3-211ENST00000588713 RB1CC1Q8TDY2 1594 aa9.47□□□□□ -0.89
LIG3-211ENST00000588713 TRIM41Q8WV44 630 aa9.43□□□□□ -0.9
LIG3-211ENST00000588713 CECR2Q9BXF3 1484 aa9.4□□□□□ -0.9
LIG3-211ENST00000588713 CC2D2AQ9P2K1 1620 aa9.29□□□□□ -0.92
LIG3-211ENST00000588713 UNC13AQ9UPW8 1703 aa9.21□□□□□ -0.94
LIG3-211ENST00000588713 BICRAQ9NZM4 1560 aa9.2□□□□□ -0.94
LIG3-211ENST00000588713 NACADO15069 1562 aa9.2□□□□□ -0.94
LIG3-211ENST00000588713 DCAF8L2P0C7V8 631 aa9.19□□□□□ -0.94
LIG3-211ENST00000588713 CUX2O14529 1486 aa9.18□□□□□ -0.94
LIG3-211ENST00000588713 EIF4G1Q04637 1599 aaKnown RBP9.07□□□□□ -0.96
LIG3-211ENST00000588713 ERCC6Q03468 1493 aa9.02□□□□□ -0.96
LIG3-211ENST00000588713 SHROOM4Q9ULL8 1493 aa8.95□□□□□ -0.98
LIG3-211ENST00000588713 MAPK8IP2Q13387 824 aaPredicted RBP8.93□□□□□ -0.98
LIG3-211ENST00000588713 SCAF1Q9H7N4 1312 aaKnown RBP8.9□□□□□ -0.98
LIG3-211ENST00000588713 DMRT2Q9Y5R5 561 aa8.86□□□□□ -0.99
LIG3-211ENST00000588713 ILDR1Q86SU0 546 aaPredicted RBP8.81□□□□□ -1
LIG3-211ENST00000588713 SCRIBQ14160 1630 aa8.77□□□□□ -1.01
LIG3-211ENST00000588713 TRHP20396 242 aaPredicted RBP8.76□□□□□ -1.01
LIG3-211ENST00000588713 MYO15BQ96JP2 1530 aa8.75□□□□□ -1.01
LIG3-211ENST00000588713 THOC2Q8NI27 1593 aaKnown RBP8.7□□□□□ -1.02
LIG3-211ENST00000588713 NESP48681 1621 aa8.69□□□□□ -1.02
LIG3-211ENST00000588713 OSCARQ8IYS5 282 aa8.68□□□□□ -1.02
LIG3-211ENST00000588713 SMARCA2P51531 1590 aa8.65□□□□□ -1.02
LIG3-211ENST00000588713 PPP4R3CPQ6ZMV5 832 aa8.65□□□□□ -1.02
LIG3-211ENST00000588713 BAZ1AQ9NRL2 1556 aaPredicted RBP8.65□□□□□ -1.03
LIG3-211ENST00000588713 RIMBP3CA6NJZ7 1639 aa8.63□□□□□ -1.03
LIG3-211ENST00000588713 RIMBP3BA6NNM3 1639 aa8.63□□□□□ -1.03
LIG3-211ENST00000588713 RIMBP3Q9UFD9 1639 aa8.63□□□□□ -1.03
LIG3-211ENST00000588713 DCAF8L1A6NGE4 600 aa8.59□□□□□ -1.03
LIG3-211ENST00000588713 CYB5RLQ6IPT4 315 aa8.57□□□□□ -1.04
LIG3-211ENST00000588713 ARHGEF11O15085 1522 aa8.54□□□□□ -1.04
LIG3-211ENST00000588713 NCAPD3P42695 1498 aa8.51□□□□□ -1.05
LIG3-211ENST00000588713 KIF21AQ7Z4S6 1674 aa8.5□□□□□ -1.05
LIG3-211ENST00000588713 CACNB1Q02641 598 aaPredicted RBP8.5□□□□□ -1.05
LIG3-211ENST00000588713 CNKSR2Q8WXI2 1034 aa8.5□□□□□ -1.05
LIG3-211ENST00000588713 HOXD11P31277 338 aaPredicted RBP8.49□□□□□ -1.05
LIG3-211ENST00000588713 PDS5BQ9NTI5 1447 aa8.45□□□□□ -1.06
LIG3-211ENST00000588713 MRC2Q9UBG0 1479 aa8.44□□□□□ -1.06
LIG3-211ENST00000588713 RNF216Q9NWF9 866 aaPredicted RBP8.43□□□□□ -1.06
LIG3-211ENST00000588713 LAMC3Q9Y6N6 1575 aa8.43□□□□□ -1.06
LIG3-211ENST00000588713 ARAP1Q96P48 1450 aa8.41□□□□□ -1.06
LIG3-211ENST00000588713 ATAD2BQ9ULI0 1458 aa8.41□□□□□ -1.06
LIG3-211ENST00000588713 WDR62O43379 1518 aa8.4□□□□□ -1.06
LIG3-211ENST00000588713 DCAF1Q9Y4B6 1507 aa8.39□□□□□ -1.07
LIG3-211ENST00000588713 ZCCHC6Q5VYS8 1495 aaKnown RBP8.38□□□□□ -1.07
LIG3-211ENST00000588713 HMGXB3Q12766 1538 aa8.37□□□□□ -1.07
LIG3-211ENST00000588713 RNF39Q9H2S5 420 aa8.35□□□□□ -1.07
LIG3-211ENST00000588713 NCBP3Q53F19 620 aaKnown RBP8.32□□□□□ -1.08
LIG3-211ENST00000588713 BAZ1BQ9UIG0 1483 aaKnown RBP8.32□□□□□ -1.08
LIG3-211ENST00000588713 LMTK3Q96Q04 1460 aa8.31□□□□□ -1.08
LIG3-211ENST00000588713 KDM4FA0A1W2PPD8 638 aa8.26□□□□□ -1.09
LIG3-211ENST00000588713 CEP164Q9UPV0 1460 aa8.26□□□□□ -1.09
LIG3-211ENST00000588713 CADPSQ9ULU8 1353 aa8.24□□□□□ -1.09
LIG3-211ENST00000588713 SOCS7O14512 581 aa8.24□□□□□ -1.09
LIG3-211ENST00000588713 C1QBPQ07021 282 aaKnown RBP8.24□□□□□ -1.09
LIG3-211ENST00000588713 FBXO41Q8TF61 875 aa8.24□□□□□ -1.09
LIG3-211ENST00000588713 RSF1Q96T23 1441 aaPredicted RBP8.21□□□□□ -1.09
LIG3-211ENST00000588713 FBLN2P98095 1184 aa8.2□□□□□ -1.1
LIG3-211ENST00000588713 ILDR2Q71H61 639 aa8.2□□□□□ -1.1
LIG3-211ENST00000588713 SMARCA4P51532 1647 aa8.2□□□□□ -1.1
LIG3-211ENST00000588713 ZNF608Q9ULD9 1512 aaPredicted RBP8.19□□□□□ -1.1
LIG3-211ENST00000588713 FANCD2Q9BXW9 1451 aa8.18□□□□□ -1.1
LIG3-211ENST00000588713 ERCC6L2Q5T890 1561 aa8.18□□□□□ -1.1
LIG3-211ENST00000588713 NPM3O75607 178 aaKnown RBP8.17□□□□□ -1.1
LIG3-211ENST00000588713 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.16□□□□□ -1.1
LIG3-211ENST00000588713 CHD1O14646 1710 aa8.15□□□□□ -1.1
LIG3-211ENST00000588713 HECW2Q9P2P5 1572 aa8.15□□□□□ -1.1
LIG3-211ENST00000588713 URB2Q14146 1524 aaKnown RBP8.15□□□□□ -1.1
LIG3-211ENST00000588713 DISP3Q9P2K9 1392 aa8.13□□□□□ -1.11
LIG3-211ENST00000588713 IFT140Q96RY7 1462 aa8.1□□□□□ -1.11
LIG3-211ENST00000588713 EIF4G3O43432 1585 aaKnown RBP8.09□□□□□ -1.11
LIG3-211ENST00000588713 SYNJ2O15056 1496 aa8.06□□□□□ -1.12
LIG3-211ENST00000588713 PEG3Q9GZU2 1588 aa8.06□□□□□ -1.12
LIG3-211ENST00000588713 GAPVD1Q14C86 1478 aa8.05□□□□□ -1.12
LIG3-211ENST00000588713 AQRO60306 1485 aaKnown RBP eCLIP8.04□□□□□ -1.12
LIG3-211ENST00000588713 CLASP1Q7Z460 1538 aa8.03□□□□□ -1.12
LIG3-211ENST00000588713 ADGRL1O94910 1474 aa8.02□□□□□ -1.13
LIG3-211ENST00000588713 KIF13AQ9H1H9 1805 aa8□□□□□ -1.13
LIG3-211ENST00000588713 KDM6BO15054 1643 aa8□□□□□ -1.13
LIG3-211ENST00000588713 SYNJ1O43426 1573 aa7.97□□□□□ -1.13
LIG3-211ENST00000588713 FAM69CQ0P6D2 419 aa7.97□□□□□ -1.13
LIG3-211ENST00000588713 CFTRP13569 1480 aa7.97□□□□□ -1.13
LIG3-211ENST00000588713 KCNA4P22459 653 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 138.9 ms