RNA–Protein interactions for RNA: ENST00000583800.1

SMCHD1-210, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-210ENST00000583800 AEBP2Q6ZN18 517 aaPredicted RBP25.2■■□□□ 1.62
SMCHD1-210ENST00000583800 CHIC1Q5VXU3 224 aa23.54■■□□□ 1.36
SMCHD1-210ENST00000583800 SENP3Q9H4L4 574 aaPredicted RBP21.54■■□□□ 1.04
SMCHD1-210ENST00000583800 PHF23Q9BUL5 403 aaPredicted RBP21.23■□□□□ 0.99
SMCHD1-210ENST00000583800 FOXD1Q16676 465 aa20.15■□□□□ 0.82
SMCHD1-210ENST00000583800 NISCHQ9Y2I1 1504 aa19.75■□□□□ 0.75
SMCHD1-210ENST00000583800 POTEDQ86YR6 584 aa19.23■□□□□ 0.67
SMCHD1-210ENST00000583800 MSH5O43196 834 aa18.99■□□□□ 0.63
SMCHD1-210ENST00000583800 PIAS4Q8N2W9 510 aaPredicted RBP18.71■□□□□ 0.59
SMCHD1-210ENST00000583800 PLPPR3Q6T4P5 718 aa18.62■□□□□ 0.57
SMCHD1-210ENST00000583800 PPP6R1Q9UPN7 881 aa18.54■□□□□ 0.56
SMCHD1-210ENST00000583800 ADRA2BP18089 450 aa18.45■□□□□ 0.54
SMCHD1-210ENST00000583800 ABCC9O60706 1549 aa17.88■□□□□ 0.45
SMCHD1-210ENST00000583800 CCDC180Q9P1Z9 1646 aa17.81■□□□□ 0.44
SMCHD1-210ENST00000583800 MAPK8IP2Q13387 824 aaPredicted RBP17.07■□□□□ 0.32
SMCHD1-210ENST00000583800 DMRT2Q9Y5R5 561 aa17.03■□□□□ 0.32
SMCHD1-210ENST00000583800 RB1CC1Q8TDY2 1594 aa16.97■□□□□ 0.31
SMCHD1-210ENST00000583800 SCAF1Q9H7N4 1312 aaKnown RBP16.87■□□□□ 0.29
SMCHD1-210ENST00000583800 NACADO15069 1562 aa16.81■□□□□ 0.28
SMCHD1-210ENST00000583800 DNAJC5BQ9UF47 199 aa16.81■□□□□ 0.28
SMCHD1-210ENST00000583800 UNC13AQ9UPW8 1703 aa16.69■□□□□ 0.26
SMCHD1-210ENST00000583800 DCAF8L2P0C7V8 631 aa16.67■□□□□ 0.26
SMCHD1-210ENST00000583800 PABPN1Q86U42 306 aaKnown RBP eCLIP16.59■□□□□ 0.25
SMCHD1-210ENST00000583800 CACNB1Q02641 598 aaPredicted RBP16.54■□□□□ 0.24
SMCHD1-210ENST00000583800 MYO15BQ96JP2 1530 aa16.53■□□□□ 0.24
SMCHD1-210ENST00000583800 BICRAQ9NZM4 1560 aa16.51■□□□□ 0.23
SMCHD1-210ENST00000583800 ZCCHC6Q5VYS8 1495 aaKnown RBP16.36■□□□□ 0.21
SMCHD1-210ENST00000583800 DCAF8L1A6NGE4 600 aa16.33■□□□□ 0.2
SMCHD1-210ENST00000583800 DCAF1Q9Y4B6 1507 aa16.29■□□□□ 0.2
SMCHD1-210ENST00000583800 PPP4R3CPQ6ZMV5 832 aa16.28■□□□□ 0.2
SMCHD1-210ENST00000583800 HOXD11P31277 338 aaPredicted RBP16.25■□□□□ 0.19
SMCHD1-210ENST00000583800 SCRIBQ14160 1630 aa16.24■□□□□ 0.19
SMCHD1-210ENST00000583800 SHROOM4Q9ULL8 1493 aa16.22■□□□□ 0.19
SMCHD1-210ENST00000583800 RNF39Q9H2S5 420 aa16.18■□□□□ 0.18
SMCHD1-210ENST00000583800 CC2D2AQ9P2K1 1620 aa16.17■□□□□ 0.18
SMCHD1-210ENST00000583800 EIF4G1Q04637 1599 aaKnown RBP16.1■□□□□ 0.17
SMCHD1-210ENST00000583800 CECR2Q9BXF3 1484 aa16.1■□□□□ 0.17
SMCHD1-210ENST00000583800 CNKSR2Q8WXI2 1034 aa16.06■□□□□ 0.16
SMCHD1-210ENST00000583800 RNF216Q9NWF9 866 aaPredicted RBP16.02■□□□□ 0.16
SMCHD1-210ENST00000583800 C1QBPQ07021 282 aaKnown RBP15.92■□□□□ 0.14
SMCHD1-210ENST00000583800 NCBP3Q53F19 620 aaKnown RBP15.52■□□□□ 0.08
SMCHD1-210ENST00000583800 NCAPD3P42695 1498 aa15.5■□□□□ 0.07
SMCHD1-210ENST00000583800 DNAJC5Q9H3Z4 198 aa15.48■□□□□ 0.07
SMCHD1-210ENST00000583800 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.47■□□□□ 0.07
SMCHD1-210ENST00000583800 SMARCA4P51532 1647 aa15.46■□□□□ 0.07
SMCHD1-210ENST00000583800 ATAD2BQ9ULI0 1458 aa15.46■□□□□ 0.07
SMCHD1-210ENST00000583800 ERCC6Q03468 1493 aa15.43■□□□□ 0.06
SMCHD1-210ENST00000583800 CUX2O14529 1486 aa15.42■□□□□ 0.06
SMCHD1-210ENST00000583800 HMGXB3Q12766 1538 aa15.42■□□□□ 0.06
SMCHD1-210ENST00000583800 SMARCA2P51531 1590 aa15.41■□□□□ 0.06
SMCHD1-210ENST00000583800 BAZ1AQ9NRL2 1556 aaPredicted RBP15.35■□□□□ 0.05
SMCHD1-210ENST00000583800 NESP48681 1621 aa15.35■□□□□ 0.05
SMCHD1-210ENST00000583800 BAZ1BQ9UIG0 1483 aaKnown RBP15.32■□□□□ 0.04
SMCHD1-210ENST00000583800 NPM3O75607 178 aaKnown RBP15.31■□□□□ 0.04
SMCHD1-210ENST00000583800 PEG3Q9GZU2 1588 aa15.29■□□□□ 0.04
SMCHD1-210ENST00000583800 THOC2Q8NI27 1593 aaKnown RBP15.24■□□□□ 0.03
SMCHD1-210ENST00000583800 MROH2BQ7Z745 1585 aa15.24■□□□□ 0.03
SMCHD1-210ENST00000583800 LAMC3Q9Y6N6 1575 aa15.2■□□□□ 0.02
SMCHD1-210ENST00000583800 KIF21AQ7Z4S6 1674 aa15.2■□□□□ 0.02
SMCHD1-210ENST00000583800 U3KPZ7 1027 aaPredicted RBP15.11■□□□□ 0.01
SMCHD1-210ENST00000583800 WIZO95785 1651 aa15.09■□□□□ 0.01
SMCHD1-210ENST00000583800 PDS5BQ9NTI5 1447 aa15.08■□□□□ 0
SMCHD1-210ENST00000583800 SPINK5Q9NQ38 1064 aaPredicted RBP15.02■□□□□ -0
SMCHD1-210ENST00000583800 CADPSQ9ULU8 1353 aa15.01□□□□□ -0.01
SMCHD1-210ENST00000583800 DSG3P32926 999 aa15.01□□□□□ -0.01
SMCHD1-210ENST00000583800 CAPN15O75808 1086 aa15□□□□□ -0.01
SMCHD1-210ENST00000583800 MRC2Q9UBG0 1479 aa14.99□□□□□ -0.01
SMCHD1-210ENST00000583800 POTEHQ6S545 545 aa14.98□□□□□ -0.01
SMCHD1-210ENST00000583800 WDR62O43379 1518 aa14.97□□□□□ -0.01
SMCHD1-210ENST00000583800 CEP164Q9UPV0 1460 aa14.91□□□□□ -0.02
SMCHD1-210ENST00000583800 FANCD2Q9BXW9 1451 aa14.88□□□□□ -0.03
SMCHD1-210ENST00000583800 TOP2AP11388 1531 aaKnown RBP14.86□□□□□ -0.03
SMCHD1-210ENST00000583800 RSF1Q96T23 1441 aaPredicted RBP14.85□□□□□ -0.03
SMCHD1-210ENST00000583800 CFTRP13569 1480 aa14.84□□□□□ -0.03
SMCHD1-210ENST00000583800 PRDM2Q13029 1718 aa14.8□□□□□ -0.04
SMCHD1-210ENST00000583800 TRIM41Q8WV44 630 aa14.8□□□□□ -0.04
SMCHD1-210ENST00000583800 URB2Q14146 1524 aaKnown RBP14.78□□□□□ -0.04
SMCHD1-210ENST00000583800 KCNA4P22459 653 aa14.75□□□□□ -0.05
SMCHD1-210ENST00000583800 SLC4A2P04920 1241 aa14.73□□□□□ -0.05
SMCHD1-210ENST00000583800 CCDC88BA6NC98 1476 aa14.66□□□□□ -0.06
SMCHD1-210ENST00000583800 TRHP20396 242 aaPredicted RBP14.66□□□□□ -0.06
SMCHD1-210ENST00000583800 OSCARQ8IYS5 282 aa14.65□□□□□ -0.06
SMCHD1-210ENST00000583800 EHMT2Q96KQ7 1210 aa14.64□□□□□ -0.07
SMCHD1-210ENST00000583800 ABCB7O75027 752 aa14.62□□□□□ -0.07
SMCHD1-210ENST00000583800 APLP2Q06481 763 aa14.62□□□□□ -0.07
SMCHD1-210ENST00000583800 ZNF608Q9ULD9 1512 aaPredicted RBP14.61□□□□□ -0.07
SMCHD1-210ENST00000583800 ZNF219Q9P2Y4 722 aaPredicted RBP14.61□□□□□ -0.07
SMCHD1-210ENST00000583800 IFT140Q96RY7 1462 aa14.6□□□□□ -0.07
SMCHD1-210ENST00000583800 TOPBP1Q92547 1522 aa14.6□□□□□ -0.07
SMCHD1-210ENST00000583800 RIMBP3CA6NJZ7 1639 aa14.58□□□□□ -0.08
SMCHD1-210ENST00000583800 RIMBP3BA6NNM3 1639 aa14.58□□□□□ -0.08
SMCHD1-210ENST00000583800 RIMBP3Q9UFD9 1639 aa14.58□□□□□ -0.08
SMCHD1-210ENST00000583800 EIF4G3O43432 1585 aaKnown RBP14.57□□□□□ -0.08
SMCHD1-210ENST00000583800 DNMBPQ6XZF7 1577 aa14.55□□□□□ -0.08
SMCHD1-210ENST00000583800 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.52□□□□□ -0.09
SMCHD1-210ENST00000583800 HNRNPUL2Q1KMD3 747 aaKnown RBP14.52□□□□□ -0.09
SMCHD1-210ENST00000583800 ABCC8Q09428 1581 aa14.51□□□□□ -0.09
SMCHD1-210ENST00000583800 CHD1O14646 1710 aa14.51□□□□□ -0.09
SMCHD1-210ENST00000583800 TARBP1Q13395 1621 aaKnown RBP14.5□□□□□ -0.09
SMCHD1-210ENST00000583800 ARHGEF11O15085 1522 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms