RNA–Protein interactions for RNA: ENST00000574744.1

TOM1L1-219, Transcript of target of myb1 like 1 membrane trafficking protein, humanhuman

TSL 3

Gene TOM1L1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOM1L1-219ENST00000574744 AEBP2Q6ZN18 517 aaPredicted RBP22.9■■□□□ 1.26
TOM1L1-219ENST00000574744 CHIC1Q5VXU3 224 aa22.47■■□□□ 1.19
TOM1L1-219ENST00000574744 NISCHQ9Y2I1 1504 aa21.05■□□□□ 0.96
TOM1L1-219ENST00000574744 PHF23Q9BUL5 403 aaPredicted RBP19.86■□□□□ 0.77
TOM1L1-219ENST00000574744 SENP3Q9H4L4 574 aaPredicted RBP19.29■□□□□ 0.68
TOM1L1-219ENST00000574744 CCDC180Q9P1Z9 1646 aa18.43■□□□□ 0.54
TOM1L1-219ENST00000574744 PLPPR3Q6T4P5 718 aa18.28■□□□□ 0.52
TOM1L1-219ENST00000574744 FOXD1Q16676 465 aa17.96■□□□□ 0.47
TOM1L1-219ENST00000574744 ZCCHC6Q5VYS8 1495 aaKnown RBP17.73■□□□□ 0.43
TOM1L1-219ENST00000574744 DCAF1Q9Y4B6 1507 aa17.53■□□□□ 0.4
TOM1L1-219ENST00000574744 PPP6R1Q9UPN7 881 aa17.48■□□□□ 0.39
TOM1L1-219ENST00000574744 ADRA2BP18089 450 aa17.41■□□□□ 0.38
TOM1L1-219ENST00000574744 MYO15BQ96JP2 1530 aa17.34■□□□□ 0.37
TOM1L1-219ENST00000574744 ABCC9O60706 1549 aa17.14■□□□□ 0.33
TOM1L1-219ENST00000574744 NACADO15069 1562 aa17.12■□□□□ 0.33
TOM1L1-219ENST00000574744 DCAF8L2P0C7V8 631 aa17.1■□□□□ 0.33
TOM1L1-219ENST00000574744 SHROOM4Q9ULL8 1493 aa16.97■□□□□ 0.31
TOM1L1-219ENST00000574744 RB1CC1Q8TDY2 1594 aa16.92■□□□□ 0.3
TOM1L1-219ENST00000574744 PIAS4Q8N2W9 510 aaPredicted RBP16.9■□□□□ 0.3
TOM1L1-219ENST00000574744 SCRIBQ14160 1630 aa16.77■□□□□ 0.27
TOM1L1-219ENST00000574744 UNC13AQ9UPW8 1703 aa16.52■□□□□ 0.24
TOM1L1-219ENST00000574744 MSH5O43196 834 aa16.41■□□□□ 0.22
TOM1L1-219ENST00000574744 SUPT5HO00267 1087 aaKnown RBP16.38■□□□□ 0.21
TOM1L1-219ENST00000574744 BICRAQ9NZM4 1560 aa16.36■□□□□ 0.21
TOM1L1-219ENST00000574744 RSF1Q96T23 1441 aaPredicted RBP16.31■□□□□ 0.2
TOM1L1-219ENST00000574744 BAZ1AQ9NRL2 1556 aaPredicted RBP16.28■□□□□ 0.2
TOM1L1-219ENST00000574744 CECR2Q9BXF3 1484 aa16.25■□□□□ 0.19
TOM1L1-219ENST00000574744 MROH2BQ7Z745 1585 aa16.2■□□□□ 0.18
TOM1L1-219ENST00000574744 SMARCA4P51532 1647 aa16.17■□□□□ 0.18
TOM1L1-219ENST00000574744 PPP4R3CPQ6ZMV5 832 aa16.16■□□□□ 0.18
TOM1L1-219ENST00000574744 PABPN1Q86U42 306 aaKnown RBP eCLIP16.1■□□□□ 0.17
TOM1L1-219ENST00000574744 PEG3Q9GZU2 1588 aa16.06■□□□□ 0.16
TOM1L1-219ENST00000574744 WIZO95785 1651 aa16.05■□□□□ 0.16
TOM1L1-219ENST00000574744 KCNA4P22459 653 aa16■□□□□ 0.15
TOM1L1-219ENST00000574744 TOP2AP11388 1531 aaKnown RBP15.99■□□□□ 0.15
TOM1L1-219ENST00000574744 SMARCA2P51531 1590 aa15.93■□□□□ 0.14
TOM1L1-219ENST00000574744 ATAD2BQ9ULI0 1458 aa15.88■□□□□ 0.13
TOM1L1-219ENST00000574744 EIF4G1Q04637 1599 aaKnown RBP15.87■□□□□ 0.13
TOM1L1-219ENST00000574744 SCAF1Q9H7N4 1312 aaKnown RBP15.84■□□□□ 0.13
TOM1L1-219ENST00000574744 HMGXB3Q12766 1538 aa15.79■□□□□ 0.12
TOM1L1-219ENST00000574744 MAPK8IP2Q13387 824 aaPredicted RBP15.79■□□□□ 0.12
TOM1L1-219ENST00000574744 BAZ1BQ9UIG0 1483 aaKnown RBP15.78■□□□□ 0.12
TOM1L1-219ENST00000574744 NCAPD3P42695 1498 aa15.77■□□□□ 0.11
TOM1L1-219ENST00000574744 CCDC88BA6NC98 1476 aa15.76■□□□□ 0.11
TOM1L1-219ENST00000574744 NCBP3Q53F19 620 aaKnown RBP15.71■□□□□ 0.11
TOM1L1-219ENST00000574744 CNKSR2Q8WXI2 1034 aa15.65■□□□□ 0.1
TOM1L1-219ENST00000574744 CC2D2AQ9P2K1 1620 aa15.58■□□□□ 0.09
TOM1L1-219ENST00000574744 NPM3O75607 178 aaKnown RBP15.57■□□□□ 0.08
TOM1L1-219ENST00000574744 TRIM41Q8WV44 630 aa15.49■□□□□ 0.07
TOM1L1-219ENST00000574744 DMRT2Q9Y5R5 561 aa15.46■□□□□ 0.07
TOM1L1-219ENST00000574744 CFTRP13569 1480 aa15.42■□□□□ 0.06
TOM1L1-219ENST00000574744 PRDM2Q13029 1718 aa15.4■□□□□ 0.06
TOM1L1-219ENST00000574744 ABCC8Q09428 1581 aa15.38■□□□□ 0.05
TOM1L1-219ENST00000574744 WRNQ14191 1432 aaPredicted RBP eCLIP15.36■□□□□ 0.05
TOM1L1-219ENST00000574744 CADPSQ9ULU8 1353 aa15.33■□□□□ 0.04
TOM1L1-219ENST00000574744 RNF216Q9NWF9 866 aaPredicted RBP15.32■□□□□ 0.04
TOM1L1-219ENST00000574744 EEA1Q15075 1411 aa15.29■□□□□ 0.04
TOM1L1-219ENST00000574744 BIVM-ERCC5R4GMW8 1640 aa15.28■□□□□ 0.04
TOM1L1-219ENST00000574744 TOP2BQ02880 1626 aa15.28■□□□□ 0.04
TOM1L1-219ENST00000574744 SYNJ1O43426 1573 aa15.28■□□□□ 0.04
TOM1L1-219ENST00000574744 HOXD11P31277 338 aaPredicted RBP15.24■□□□□ 0.03
TOM1L1-219ENST00000574744 LAMC3Q9Y6N6 1575 aa15.24■□□□□ 0.03
TOM1L1-219ENST00000574744 SLC4A1APQ9BWU0 796 aaKnown RBP15.2■□□□□ 0.02
TOM1L1-219ENST00000574744 CUX1P39880 1505 aa15.16■□□□□ 0.02
TOM1L1-219ENST00000574744 FANCD2Q9BXW9 1451 aa15.14■□□□□ 0.01
TOM1L1-219ENST00000574744 DNAJC5BQ9UF47 199 aa15.13■□□□□ 0.01
TOM1L1-219ENST00000574744 SOGA1O94964 1423 aa15.11■□□□□ 0.01
TOM1L1-219ENST00000574744 LOC105371045A0A1W2PR82 267 aa15.09■□□□□ 0.01
TOM1L1-219ENST00000574744 PDS5BQ9NTI5 1447 aa15.09■□□□□ 0.01
TOM1L1-219ENST00000574744 DNMBPQ6XZF7 1577 aa15.07■□□□□ 0
TOM1L1-219ENST00000574744 FAM9AQ8IZU1 332 aaPredicted RBP15.06■□□□□ 0
TOM1L1-219ENST00000574744 CEP164Q9UPV0 1460 aa15.06■□□□□ 0
TOM1L1-219ENST00000574744 NESP48681 1621 aa15.06■□□□□ 0
TOM1L1-219ENST00000574744 CSRNP3Q8WYN3 585 aa15.05■□□□□ -0
TOM1L1-219ENST00000574744 KIF21BO75037 1637 aa15.04■□□□□ -0
TOM1L1-219ENST00000574744 RUSC2Q8N2Y8 1516 aa15.02■□□□□ -0
TOM1L1-219ENST00000574744 TOPBP1Q92547 1522 aa15□□□□□ -0.01
TOM1L1-219ENST00000574744 GOLGA3Q08378 1498 aa15□□□□□ -0.01
TOM1L1-219ENST00000574744 KIF27Q86VH2 1401 aa15□□□□□ -0.01
TOM1L1-219ENST00000574744 FGD5Q6ZNL6 1462 aa14.99□□□□□ -0.01
TOM1L1-219ENST00000574744 TNIKQ9UKE5 1360 aa14.97□□□□□ -0.01
TOM1L1-219ENST00000574744 EHMT2Q96KQ7 1210 aa14.96□□□□□ -0.01
TOM1L1-219ENST00000574744 KIF21AQ7Z4S6 1674 aa14.95□□□□□ -0.02
TOM1L1-219ENST00000574744 ERICH3Q5RHP9 1530 aa14.95□□□□□ -0.02
TOM1L1-219ENST00000574744 URB2Q14146 1524 aaKnown RBP14.93□□□□□ -0.02
TOM1L1-219ENST00000574744 PRXQ9BXM0 1461 aa14.93□□□□□ -0.02
TOM1L1-219ENST00000574744 ABCA10Q8WWZ4 1543 aa14.92□□□□□ -0.02
TOM1L1-219ENST00000574744 POLA1P09884 1462 aaPredicted RBP14.92□□□□□ -0.02
TOM1L1-219ENST00000574744 CUX2O14529 1486 aa14.89□□□□□ -0.03
TOM1L1-219ENST00000574744 MRC2Q9UBG0 1479 aa14.88□□□□□ -0.03
TOM1L1-219ENST00000574744 WDR97A6NE52 1622 aa14.88□□□□□ -0.03
TOM1L1-219ENST00000574744 RAPGEF2Q9Y4G8 1499 aa14.84□□□□□ -0.03
TOM1L1-219ENST00000574744 CEP162Q5TB80 1403 aa14.83□□□□□ -0.03
TOM1L1-219ENST00000574744 WDR62O43379 1518 aa14.82□□□□□ -0.04
TOM1L1-219ENST00000574744 IGF1RP08069 1367 aa14.81□□□□□ -0.04
TOM1L1-219ENST00000574744 RAD54L2Q9Y4B4 1467 aa14.8□□□□□ -0.04
TOM1L1-219ENST00000574744 ABCA5Q8WWZ7 1642 aa14.8□□□□□ -0.04
TOM1L1-219ENST00000574744 UBTFP17480 764 aaKnown RBP14.79□□□□□ -0.04
TOM1L1-219ENST00000574744 CUL7Q14999 1698 aa14.79□□□□□ -0.04
TOM1L1-219ENST00000574744 TARBP1Q13395 1621 aaKnown RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms