RNA–Protein interactions for RNA: ENST00000572428.5

TVP23A-205, Transcript of trans-golgi network vesicle protein 23 homolog A, humanhuman

TSL 1 (best)

Gene TVP23A, Length 3,256 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23A-205ENST00000572428 NISCHQ9Y2I1 1504 aa19.59■□□□□ 0.73
TVP23A-205ENST00000572428 CCDC180Q9P1Z9 1646 aa17.34■□□□□ 0.37
TVP23A-205ENST00000572428 SLC24A1O60721 1099 aa16.81■□□□□ 0.28
TVP23A-205ENST00000572428 ZCCHC6Q5VYS8 1495 aaKnown RBP16.45■□□□□ 0.22
TVP23A-205ENST00000572428 DCAF1Q9Y4B6 1507 aa16.34■□□□□ 0.21
TVP23A-205ENST00000572428 MYO15BQ96JP2 1530 aa16.24■□□□□ 0.19
TVP23A-205ENST00000572428 ABCC9O60706 1549 aa16.22■□□□□ 0.19
TVP23A-205ENST00000572428 NACADO15069 1562 aa16.1■□□□□ 0.17
TVP23A-205ENST00000572428 PRKCSHP14314 528 aaPredicted RBP16.02■□□□□ 0.16
TVP23A-205ENST00000572428 PELP1Q8IZL8 1130 aaKnown RBP15.97■□□□□ 0.15
TVP23A-205ENST00000572428 RB1CC1Q8TDY2 1594 aa15.97■□□□□ 0.15
TVP23A-205ENST00000572428 MYT1Q01538 1121 aa15.94■□□□□ 0.14
TVP23A-205ENST00000572428 DCAF8L2P0C7V8 631 aa15.81■□□□□ 0.12
TVP23A-205ENST00000572428 EHMT2Q96KQ7 1210 aa15.8■□□□□ 0.12
TVP23A-205ENST00000572428 UNC13AQ9UPW8 1703 aa15.76■□□□□ 0.11
TVP23A-205ENST00000572428 SCRIBQ14160 1630 aa15.68■□□□□ 0.1
TVP23A-205ENST00000572428 TTBK1Q5TCY1 1321 aaPredicted RBP15.67■□□□□ 0.1
TVP23A-205ENST00000572428 APLP2Q06481 763 aa15.64■□□□□ 0.09
TVP23A-205ENST00000572428 PLPPR3Q6T4P5 718 aa15.63■□□□□ 0.09
TVP23A-205ENST00000572428 DAXXQ9UER7 740 aaPredicted RBP15.52■□□□□ 0.08
TVP23A-205ENST00000572428 BICRAQ9NZM4 1560 aa15.52■□□□□ 0.07
TVP23A-205ENST00000572428 SHROOM4Q9ULL8 1493 aa15.5■□□□□ 0.07
TVP23A-205ENST00000572428 ERICH6Q7L0X2 663 aa15.33■□□□□ 0.04
TVP23A-205ENST00000572428 RTN4Q9NQC3 1192 aaKnown RBP15.27■□□□□ 0.03
TVP23A-205ENST00000572428 BAZ1AQ9NRL2 1556 aaPredicted RBP15.15■□□□□ 0.02
TVP23A-205ENST00000572428 PABPN1Q86U42 306 aaKnown RBP eCLIP15.15■□□□□ 0.02
TVP23A-205ENST00000572428 CECR2Q9BXF3 1484 aa15.13■□□□□ 0.01
TVP23A-205ENST00000572428 SMARCA4P51532 1647 aa15.13■□□□□ 0.01
TVP23A-205ENST00000572428 MROH2BQ7Z745 1585 aa15.07■□□□□ 0
TVP23A-205ENST00000572428 RSF1Q96T23 1441 aaPredicted RBP15.05■□□□□ 0
TVP23A-205ENST00000572428 PEG3Q9GZU2 1588 aa15.05■□□□□ 0
TVP23A-205ENST00000572428 EIF4G1Q04637 1599 aaKnown RBP15.01□□□□□ -0.01
TVP23A-205ENST00000572428 WIZO95785 1651 aa14.97□□□□□ -0.01
TVP23A-205ENST00000572428 SMARCA2P51531 1590 aa14.9□□□□□ -0.02
TVP23A-205ENST00000572428 CHIC1Q5VXU3 224 aa14.9□□□□□ -0.02
TVP23A-205ENST00000572428 ATAD2BQ9ULI0 1458 aa14.86□□□□□ -0.03
TVP23A-205ENST00000572428 TOP2AP11388 1531 aaKnown RBP14.85□□□□□ -0.03
TVP23A-205ENST00000572428 HMGXB3Q12766 1538 aa14.83□□□□□ -0.03
TVP23A-205ENST00000572428 CC2D2AQ9P2K1 1620 aa14.83□□□□□ -0.04
TVP23A-205ENST00000572428 NCAPD3P42695 1498 aa14.81□□□□□ -0.04
TVP23A-205ENST00000572428 SUPT5HO00267 1087 aaKnown RBP14.8□□□□□ -0.04
TVP23A-205ENST00000572428 BCL11AQ9H165 835 aa14.79□□□□□ -0.04
TVP23A-205ENST00000572428 NCBP3Q53F19 620 aaKnown RBP14.75□□□□□ -0.05
TVP23A-205ENST00000572428 BAZ1BQ9UIG0 1483 aaKnown RBP14.73□□□□□ -0.05
TVP23A-205ENST00000572428 EIF5BO60841 1220 aaKnown RBP14.7□□□□□ -0.06
TVP23A-205ENST00000572428 PLEKHG5O94827 1062 aa14.63□□□□□ -0.07
TVP23A-205ENST00000572428 FAM9AQ8IZU1 332 aaPredicted RBP14.61□□□□□ -0.07
TVP23A-205ENST00000572428 CCDC88BA6NC98 1476 aa14.61□□□□□ -0.07
TVP23A-205ENST00000572428 KCNA4P22459 653 aa14.55□□□□□ -0.08
TVP23A-205ENST00000572428 TIMELESSQ9UNS1 1208 aa14.55□□□□□ -0.08
TVP23A-205ENST00000572428 PRDM2Q13029 1718 aa14.54□□□□□ -0.08
TVP23A-205ENST00000572428 DNAJC5BQ9UF47 199 aa14.44□□□□□ -0.1
TVP23A-205ENST00000572428 CFTRP13569 1480 aa14.41□□□□□ -0.1
TVP23A-205ENST00000572428 KLHL34Q8N239 644 aa14.39□□□□□ -0.11
TVP23A-205ENST00000572428 LAMC3Q9Y6N6 1575 aa14.38□□□□□ -0.11
TVP23A-205ENST00000572428 CADPSQ9ULU8 1353 aa14.34□□□□□ -0.11
TVP23A-205ENST00000572428 CSRNP3Q8WYN3 585 aa14.31□□□□□ -0.12
TVP23A-205ENST00000572428 TULP1O00294 542 aaPredicted RBP14.3□□□□□ -0.12
TVP23A-205ENST00000572428 ARXQ96QS3 562 aa14.26□□□□□ -0.13
TVP23A-205ENST00000572428 BIVM-ERCC5R4GMW8 1640 aa14.23□□□□□ -0.13
TVP23A-205ENST00000572428 NESP48681 1621 aa14.22□□□□□ -0.13
TVP23A-205ENST00000572428 AMER1Q5JTC6 1135 aaPredicted RBP14.21□□□□□ -0.13
TVP23A-205ENST00000572428 ABCC8Q09428 1581 aa14.2□□□□□ -0.14
TVP23A-205ENST00000572428 KIF21AQ7Z4S6 1674 aa14.2□□□□□ -0.14
TVP23A-205ENST00000572428 AEBP2Q6ZN18 517 aaPredicted RBP14.2□□□□□ -0.14
TVP23A-205ENST00000572428 TOP2BQ02880 1626 aa14.18□□□□□ -0.14
TVP23A-205ENST00000572428 FANCD2Q9BXW9 1451 aa14.17□□□□□ -0.14
TVP23A-205ENST00000572428 SYNJ1O43426 1573 aa14.16□□□□□ -0.14
TVP23A-205ENST00000572428 PDS5BQ9NTI5 1447 aa14.15□□□□□ -0.14
TVP23A-205ENST00000572428 WRNQ14191 1432 aaPredicted RBP eCLIP14.15□□□□□ -0.14
TVP23A-205ENST00000572428 CUX1P39880 1505 aa14.12□□□□□ -0.15
TVP23A-205ENST00000572428 CEP164Q9UPV0 1460 aa14.11□□□□□ -0.15
TVP23A-205ENST00000572428 DNMBPQ6XZF7 1577 aa14.1□□□□□ -0.15
TVP23A-205ENST00000572428 THOC2Q8NI27 1593 aaKnown RBP14.05□□□□□ -0.16
TVP23A-205ENST00000572428 PODXL2Q9NZ53 605 aa14.04□□□□□ -0.16
TVP23A-205ENST00000572428 URB2Q14146 1524 aaKnown RBP14.04□□□□□ -0.16
TVP23A-205ENST00000572428 TOPBP1Q92547 1522 aa14.04□□□□□ -0.16
TVP23A-205ENST00000572428 WDR62O43379 1518 aa14.03□□□□□ -0.16
TVP23A-205ENST00000572428 MRC2Q9UBG0 1479 aa14.02□□□□□ -0.17
TVP23A-205ENST00000572428 TRIM41Q8WV44 630 aa14.02□□□□□ -0.17
TVP23A-205ENST00000572428 WDR97A6NE52 1622 aa14.01□□□□□ -0.17
TVP23A-205ENST00000572428 RANGAP1P46060 587 aaPredicted RBP14□□□□□ -0.17
TVP23A-205ENST00000572428 TAOK2Q9UL54 1235 aa13.98□□□□□ -0.17
TVP23A-205ENST00000572428 FGD5Q6ZNL6 1462 aa13.96□□□□□ -0.17
TVP23A-205ENST00000572428 SCAF1Q9H7N4 1312 aaKnown RBP13.94□□□□□ -0.18
TVP23A-205ENST00000572428 POLA1P09884 1462 aaPredicted RBP13.94□□□□□ -0.18
TVP23A-205ENST00000572428 TARBP1Q13395 1621 aaKnown RBP13.93□□□□□ -0.18
TVP23A-205ENST00000572428 EEA1Q15075 1411 aa13.92□□□□□ -0.18
TVP23A-205ENST00000572428 ERCC6Q03468 1493 aa13.92□□□□□ -0.18
TVP23A-205ENST00000572428 TPRNQ4KMQ1 711 aa13.92□□□□□ -0.18
TVP23A-205ENST00000572428 ABCA10Q8WWZ4 1543 aa13.91□□□□□ -0.18
TVP23A-205ENST00000572428 PHF23Q9BUL5 403 aaPredicted RBP13.9□□□□□ -0.18
TVP23A-205ENST00000572428 ABCA5Q8WWZ7 1642 aa13.86□□□□□ -0.19
TVP23A-205ENST00000572428 CUX2O14529 1486 aa13.86□□□□□ -0.19
TVP23A-205ENST00000572428 SOGA1O94964 1423 aa13.86□□□□□ -0.19
TVP23A-205ENST00000572428 RUSC2Q8N2Y8 1516 aa13.83□□□□□ -0.19
TVP23A-205ENST00000572428 IFT140Q96RY7 1462 aa13.82□□□□□ -0.2
TVP23A-205ENST00000572428 RAD54L2Q9Y4B4 1467 aa13.82□□□□□ -0.2
TVP23A-205ENST00000572428 UBE2Q2Q8WVN8 375 aa13.82□□□□□ -0.2
TVP23A-205ENST00000572428 KIF21BO75037 1637 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms