RNA–Protein interactions for RNA: ENST00000568673.5

TCF4-240, Transcript of transcription factor 4, humanhuman

TSL 5 BASIC

Gene TCF4, Length 2,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-240ENST00000568673 NISCHQ9Y2I1 1504 aa20.53■□□□□ 0.88
TCF4-240ENST00000568673 CCDC180Q9P1Z9 1646 aa17.58■□□□□ 0.41
TCF4-240ENST00000568673 ZCCHC6Q5VYS8 1495 aaKnown RBP17.34■□□□□ 0.37
TCF4-240ENST00000568673 SHROOM4Q9ULL8 1493 aa17.22■□□□□ 0.35
TCF4-240ENST00000568673 DCAF8L2P0C7V8 631 aa16.95■□□□□ 0.3
TCF4-240ENST00000568673 DCAF1Q9Y4B6 1507 aa16.93■□□□□ 0.3
TCF4-240ENST00000568673 SUPT5HO00267 1087 aaKnown RBP16.84■□□□□ 0.29
TCF4-240ENST00000568673 MYO15BQ96JP2 1530 aa16.53■□□□□ 0.24
TCF4-240ENST00000568673 CHIC1Q5VXU3 224 aa16.36■□□□□ 0.21
TCF4-240ENST00000568673 SCRIBQ14160 1630 aa16.33■□□□□ 0.2
TCF4-240ENST00000568673 ABCC9O60706 1549 aa16.31■□□□□ 0.2
TCF4-240ENST00000568673 NACADO15069 1562 aa16.3■□□□□ 0.2
TCF4-240ENST00000568673 RSF1Q96T23 1441 aaPredicted RBP16.17■□□□□ 0.18
TCF4-240ENST00000568673 RB1CC1Q8TDY2 1594 aa16.04■□□□□ 0.16
TCF4-240ENST00000568673 CECR2Q9BXF3 1484 aa15.97■□□□□ 0.15
TCF4-240ENST00000568673 MROH2BQ7Z745 1585 aa15.91■□□□□ 0.14
TCF4-240ENST00000568673 LOC105371045A0A1W2PR82 267 aa15.8■□□□□ 0.12
TCF4-240ENST00000568673 WIZO95785 1651 aa15.8■□□□□ 0.12
TCF4-240ENST00000568673 BAZ1AQ9NRL2 1556 aaPredicted RBP15.8■□□□□ 0.12
TCF4-240ENST00000568673 TRIM41Q8WV44 630 aa15.77■□□□□ 0.11
TCF4-240ENST00000568673 UNC13AQ9UPW8 1703 aa15.75■□□□□ 0.11
TCF4-240ENST00000568673 SMARCA4P51532 1647 aa15.66■□□□□ 0.1
TCF4-240ENST00000568673 PCGF6Q9BYE7 350 aa15.62■□□□□ 0.09
TCF4-240ENST00000568673 TOP2AP11388 1531 aaKnown RBP15.61■□□□□ 0.09
TCF4-240ENST00000568673 BICRAQ9NZM4 1560 aa15.58■□□□□ 0.09
TCF4-240ENST00000568673 PABPN1Q86U42 306 aaKnown RBP eCLIP15.55■□□□□ 0.08
TCF4-240ENST00000568673 EIF4G1Q04637 1599 aaKnown RBP15.55■□□□□ 0.08
TCF4-240ENST00000568673 HRCP23327 699 aa15.54■□□□□ 0.08
TCF4-240ENST00000568673 FAM9AQ8IZU1 332 aaPredicted RBP15.54■□□□□ 0.08
TCF4-240ENST00000568673 CCDC88BA6NC98 1476 aa15.51■□□□□ 0.07
TCF4-240ENST00000568673 SMARCA2P51531 1590 aa15.5■□□□□ 0.07
TCF4-240ENST00000568673 TRIM26Q12899 539 aaPredicted RBP15.44■□□□□ 0.06
TCF4-240ENST00000568673 PEG3Q9GZU2 1588 aa15.43■□□□□ 0.06
TCF4-240ENST00000568673 AEBP2Q6ZN18 517 aaPredicted RBP15.42■□□□□ 0.06
TCF4-240ENST00000568673 ABCC8Q09428 1581 aa15.36■□□□□ 0.05
TCF4-240ENST00000568673 EHMT2Q96KQ7 1210 aa15.33■□□□□ 0.04
TCF4-240ENST00000568673 ATAD2BQ9ULI0 1458 aa15.31■□□□□ 0.04
TCF4-240ENST00000568673 BAZ1BQ9UIG0 1483 aaKnown RBP15.24■□□□□ 0.03
TCF4-240ENST00000568673 SOGA1O94964 1423 aa15.2■□□□□ 0.02
TCF4-240ENST00000568673 EEA1Q15075 1411 aa15.2■□□□□ 0.02
TCF4-240ENST00000568673 WRNQ14191 1432 aaPredicted RBP eCLIP15.19■□□□□ 0.02
TCF4-240ENST00000568673 CSRNP3Q8WYN3 585 aa15.15■□□□□ 0.02
TCF4-240ENST00000568673 PPARGC1BQ86YN6 1023 aaKnown RBP15.14■□□□□ 0.01
TCF4-240ENST00000568673 RUSC2Q8N2Y8 1516 aa15.12■□□□□ 0.01
TCF4-240ENST00000568673 TNIKQ9UKE5 1360 aa15.11■□□□□ 0.01
TCF4-240ENST00000568673 SYNJ1O43426 1573 aa15.09■□□□□ 0.01
TCF4-240ENST00000568673 NCAPD3P42695 1498 aa15.08■□□□□ 0
TCF4-240ENST00000568673 CEP162Q5TB80 1403 aa15.07■□□□□ 0
TCF4-240ENST00000568673 ZEB1P37275 1124 aaPredicted RBP15.06■□□□□ 0
TCF4-240ENST00000568673 HMGXB3Q12766 1538 aa15.06■□□□□ 0
TCF4-240ENST00000568673 GOLGA3Q08378 1498 aa15.04■□□□□ -0
TCF4-240ENST00000568673 UBTFP17480 764 aaKnown RBP15.03■□□□□ -0
TCF4-240ENST00000568673 CEP164Q9UPV0 1460 aa14.98□□□□□ -0.01
TCF4-240ENST00000568673 TOP2BQ02880 1626 aa14.97□□□□□ -0.01
TCF4-240ENST00000568673 KIF21BO75037 1637 aa14.96□□□□□ -0.01
TCF4-240ENST00000568673 BIVM-ERCC5R4GMW8 1640 aa14.92□□□□□ -0.02
TCF4-240ENST00000568673 CFTRP13569 1480 aa14.9□□□□□ -0.02
TCF4-240ENST00000568673 RAPGEF2Q9Y4G8 1499 aa14.85□□□□□ -0.03
TCF4-240ENST00000568673 CLIP1P30622 1438 aa14.84□□□□□ -0.03
TCF4-240ENST00000568673 CUX1P39880 1505 aa14.83□□□□□ -0.04
TCF4-240ENST00000568673 TTBK1Q5TCY1 1321 aaPredicted RBP14.8□□□□□ -0.04
TCF4-240ENST00000568673 PRXQ9BXM0 1461 aa14.78□□□□□ -0.04
TCF4-240ENST00000568673 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.78□□□□□ -0.04
TCF4-240ENST00000568673 ERICH3Q5RHP9 1530 aa14.77□□□□□ -0.04
TCF4-240ENST00000568673 VPS8Q8N3P4 1428 aa14.77□□□□□ -0.04
TCF4-240ENST00000568673 CCER1Q8TC90 406 aaPredicted RBP14.76□□□□□ -0.05
TCF4-240ENST00000568673 KIF27Q86VH2 1401 aa14.76□□□□□ -0.05
TCF4-240ENST00000568673 CADPSQ9ULU8 1353 aa14.75□□□□□ -0.05
TCF4-240ENST00000568673 PRDM2Q13029 1718 aa14.75□□□□□ -0.05
TCF4-240ENST00000568673 CC2D2AQ9P2K1 1620 aa14.73□□□□□ -0.05
TCF4-240ENST00000568673 APLP2Q06481 763 aa14.68□□□□□ -0.06
TCF4-240ENST00000568673 RANGAP1P46060 587 aaPredicted RBP14.67□□□□□ -0.06
TCF4-240ENST00000568673 CUX2O14529 1486 aa14.61□□□□□ -0.07
TCF4-240ENST00000568673 ARAP1Q96P48 1450 aa14.61□□□□□ -0.07
TCF4-240ENST00000568673 IGF1RP08069 1367 aa14.61□□□□□ -0.07
TCF4-240ENST00000568673 FGD5Q6ZNL6 1462 aa14.59□□□□□ -0.07
TCF4-240ENST00000568673 FANCD2Q9BXW9 1451 aa14.59□□□□□ -0.07
TCF4-240ENST00000568673 HNRNPUL2Q1KMD3 747 aaKnown RBP14.55□□□□□ -0.08
TCF4-240ENST00000568673 CARMIL1Q5VZK9 1371 aa14.54□□□□□ -0.08
TCF4-240ENST00000568673 ARHGAP35Q9NRY4 1499 aa14.53□□□□□ -0.08
TCF4-240ENST00000568673 DNMBPQ6XZF7 1577 aa14.51□□□□□ -0.09
TCF4-240ENST00000568673 KANK4Q5T7N3 995 aaPredicted RBP14.49□□□□□ -0.09
TCF4-240ENST00000568673 NESP48681 1621 aa14.48□□□□□ -0.09
TCF4-240ENST00000568673 TOPBP1Q92547 1522 aa14.47□□□□□ -0.09
TCF4-240ENST00000568673 ABCA10Q8WWZ4 1543 aa14.46□□□□□ -0.1
TCF4-240ENST00000568673 POLA1P09884 1462 aaPredicted RBP14.46□□□□□ -0.1
TCF4-240ENST00000568673 LAMC3Q9Y6N6 1575 aa14.45□□□□□ -0.1
TCF4-240ENST00000568673 RAD54L2Q9Y4B4 1467 aa14.44□□□□□ -0.1
TCF4-240ENST00000568673 RRBP1Q9P2E9 1410 aaKnown RBP14.41□□□□□ -0.1
TCF4-240ENST00000568673 MAP3K1Q13233 1512 aa14.39□□□□□ -0.11
TCF4-240ENST00000568673 DIEXFQ68CQ4 756 aaKnown RBP14.38□□□□□ -0.11
TCF4-240ENST00000568673 URB2Q14146 1524 aaKnown RBP14.37□□□□□ -0.11
TCF4-240ENST00000568673 PDS5BQ9NTI5 1447 aa14.37□□□□□ -0.11
TCF4-240ENST00000568673 CUL7Q14999 1698 aa14.36□□□□□ -0.11
TCF4-240ENST00000568673 FHAD1B1AJZ9 1412 aa14.35□□□□□ -0.11
TCF4-240ENST00000568673 ZNF316A6NFI3 1004 aaPredicted RBP14.35□□□□□ -0.11
TCF4-240ENST00000568673 CCNB3Q8WWL7 1395 aa14.35□□□□□ -0.11
TCF4-240ENST00000568673 CLSPNQ9HAW4 1339 aa14.35□□□□□ -0.11
TCF4-240ENST00000568673 TIAM1Q13009 1591 aa14.34□□□□□ -0.11
TCF4-240ENST00000568673 DNAJC5BQ9UF47 199 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms