RNA–Protein interactions for RNA: ENST00000568095.5

LINC01541-202, Transcript of long intergenic non-protein coding RNA 1541, humanhuman

TSL 1 (best) BASIC

Gene LINC01541, Length 3,105 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01541-202ENST00000568095 NISCHQ9Y2I1 1504 aa11.88□□□□□ -0.51
LINC01541-202ENST00000568095 AEBP2Q6ZN18 517 aaPredicted RBP11.64□□□□□ -0.55
LINC01541-202ENST00000568095 CHIC1Q5VXU3 224 aa10.83□□□□□ -0.68
LINC01541-202ENST00000568095 CCDC180Q9P1Z9 1646 aa10.51□□□□□ -0.73
LINC01541-202ENST00000568095 ZCCHC6Q5VYS8 1495 aaKnown RBP10.03□□□□□ -0.8
LINC01541-202ENST00000568095 DCAF1Q9Y4B6 1507 aa9.93□□□□□ -0.82
LINC01541-202ENST00000568095 MYO15BQ96JP2 1530 aa9.83□□□□□ -0.84
LINC01541-202ENST00000568095 SENP3Q9H4L4 574 aaPredicted RBP9.83□□□□□ -0.84
LINC01541-202ENST00000568095 PHF23Q9BUL5 403 aaPredicted RBP9.76□□□□□ -0.85
LINC01541-202ENST00000568095 NACADO15069 1562 aa9.69□□□□□ -0.86
LINC01541-202ENST00000568095 ABCC9O60706 1549 aa9.68□□□□□ -0.86
LINC01541-202ENST00000568095 RB1CC1Q8TDY2 1594 aa9.57□□□□□ -0.88
LINC01541-202ENST00000568095 UNC13AQ9UPW8 1703 aa9.57□□□□□ -0.88
LINC01541-202ENST00000568095 SCRIBQ14160 1630 aa9.49□□□□□ -0.89
LINC01541-202ENST00000568095 EHMT2Q96KQ7 1210 aa9.43□□□□□ -0.9
LINC01541-202ENST00000568095 POTEDQ86YR6 584 aa9.42□□□□□ -0.9
LINC01541-202ENST00000568095 BICRAQ9NZM4 1560 aa9.4□□□□□ -0.9
LINC01541-202ENST00000568095 SLC24A1O60721 1099 aa9.4□□□□□ -0.91
LINC01541-202ENST00000568095 SHROOM4Q9ULL8 1493 aa9.4□□□□□ -0.91
LINC01541-202ENST00000568095 DCAF8L2P0C7V8 631 aa9.37□□□□□ -0.91
LINC01541-202ENST00000568095 FOXD1Q16676 465 aa9.26□□□□□ -0.93
LINC01541-202ENST00000568095 HRCP23327 699 aa9.23□□□□□ -0.93
LINC01541-202ENST00000568095 CECR2Q9BXF3 1484 aa9.18□□□□□ -0.94
LINC01541-202ENST00000568095 SMARCA4P51532 1647 aa9.18□□□□□ -0.94
LINC01541-202ENST00000568095 PLPPR3Q6T4P5 718 aa9.17□□□□□ -0.94
LINC01541-202ENST00000568095 RSF1Q96T23 1441 aaPredicted RBP9.16□□□□□ -0.94
LINC01541-202ENST00000568095 MROH2BQ7Z745 1585 aa9.16□□□□□ -0.94
LINC01541-202ENST00000568095 BAZ1AQ9NRL2 1556 aaPredicted RBP9.16□□□□□ -0.94
LINC01541-202ENST00000568095 PEG3Q9GZU2 1588 aa9.16□□□□□ -0.94
LINC01541-202ENST00000568095 WIZO95785 1651 aa9.11□□□□□ -0.95
LINC01541-202ENST00000568095 EIF4G1Q04637 1599 aaKnown RBP9.04□□□□□ -0.96
LINC01541-202ENST00000568095 TOP2AP11388 1531 aaKnown RBP9.03□□□□□ -0.96
LINC01541-202ENST00000568095 PABPN1Q86U42 306 aaKnown RBP eCLIP9.02□□□□□ -0.96
LINC01541-202ENST00000568095 PELP1Q8IZL8 1130 aaKnown RBP8.99□□□□□ -0.97
LINC01541-202ENST00000568095 SMARCA2P51531 1590 aa8.97□□□□□ -0.97
LINC01541-202ENST00000568095 ATAD2BQ9ULI0 1458 aa8.97□□□□□ -0.97
LINC01541-202ENST00000568095 HMGXB3Q12766 1538 aa8.97□□□□□ -0.97
LINC01541-202ENST00000568095 KCNA4P22459 653 aa8.95□□□□□ -0.98
LINC01541-202ENST00000568095 SUPT5HO00267 1087 aaKnown RBP8.94□□□□□ -0.98
LINC01541-202ENST00000568095 NCAPD3P42695 1498 aa8.91□□□□□ -0.98
LINC01541-202ENST00000568095 CC2D2AQ9P2K1 1620 aa8.9□□□□□ -0.98
LINC01541-202ENST00000568095 PPARGC1BQ86YN6 1023 aaKnown RBP8.89□□□□□ -0.99
LINC01541-202ENST00000568095 CSRNP3Q8WYN3 585 aa8.89□□□□□ -0.99
LINC01541-202ENST00000568095 PCGF6Q9BYE7 350 aa8.88□□□□□ -0.99
LINC01541-202ENST00000568095 CCDC88BA6NC98 1476 aa8.87□□□□□ -0.99
LINC01541-202ENST00000568095 BAZ1BQ9UIG0 1483 aaKnown RBP8.86□□□□□ -0.99
LINC01541-202ENST00000568095 PRDM2Q13029 1718 aa8.85□□□□□ -0.99
LINC01541-202ENST00000568095 RTN4Q9NQC3 1192 aaKnown RBP8.78□□□□□ -1
LINC01541-202ENST00000568095 AMER1Q5JTC6 1135 aaPredicted RBP8.78□□□□□ -1
LINC01541-202ENST00000568095 TRIM26Q12899 539 aaPredicted RBP8.72□□□□□ -1.01
LINC01541-202ENST00000568095 CFTRP13569 1480 aa8.71□□□□□ -1.01
LINC01541-202ENST00000568095 MSH5O43196 834 aa8.71□□□□□ -1.01
LINC01541-202ENST00000568095 SCAF1Q9H7N4 1312 aaKnown RBP8.71□□□□□ -1.02
LINC01541-202ENST00000568095 ZEB1P37275 1124 aaPredicted RBP8.69□□□□□ -1.02
LINC01541-202ENST00000568095 SLC4A1APQ9BWU0 796 aaKnown RBP8.69□□□□□ -1.02
LINC01541-202ENST00000568095 BIVM-ERCC5R4GMW8 1640 aa8.68□□□□□ -1.02
LINC01541-202ENST00000568095 MYT1Q01538 1121 aa8.67□□□□□ -1.02
LINC01541-202ENST00000568095 ABCC8Q09428 1581 aa8.67□□□□□ -1.02
LINC01541-202ENST00000568095 SYNJ1O43426 1573 aa8.65□□□□□ -1.02
LINC01541-202ENST00000568095 LAMC3Q9Y6N6 1575 aa8.64□□□□□ -1.03
LINC01541-202ENST00000568095 TOP2BQ02880 1626 aa8.63□□□□□ -1.03
LINC01541-202ENST00000568095 PPP6R1Q9UPN7 881 aa8.63□□□□□ -1.03
LINC01541-202ENST00000568095 PIAS4Q8N2W9 510 aaPredicted RBP8.62□□□□□ -1.03
LINC01541-202ENST00000568095 CADPSQ9ULU8 1353 aa8.6□□□□□ -1.03
LINC01541-202ENST00000568095 LOC105371045A0A1W2PR82 267 aa8.59□□□□□ -1.03
LINC01541-202ENST00000568095 CUX1P39880 1505 aa8.59□□□□□ -1.03
LINC01541-202ENST00000568095 KIF21AQ7Z4S6 1674 aa8.58□□□□□ -1.04
LINC01541-202ENST00000568095 ADRA2BP18089 450 aa8.58□□□□□ -1.04
LINC01541-202ENST00000568095 DNAJC5BQ9UF47 199 aa8.57□□□□□ -1.04
LINC01541-202ENST00000568095 WRNQ14191 1432 aaPredicted RBP eCLIP8.56□□□□□ -1.04
LINC01541-202ENST00000568095 NESP48681 1621 aa8.56□□□□□ -1.04
LINC01541-202ENST00000568095 WDR97A6NE52 1622 aa8.55□□□□□ -1.04
LINC01541-202ENST00000568095 DNMBPQ6XZF7 1577 aa8.52□□□□□ -1.04
LINC01541-202ENST00000568095 FANCD2Q9BXW9 1451 aa8.52□□□□□ -1.04
LINC01541-202ENST00000568095 ACIN1Q9UKV3 1341 aaKnown RBP8.5□□□□□ -1.05
LINC01541-202ENST00000568095 URB2Q14146 1524 aaKnown RBP8.49□□□□□ -1.05
LINC01541-202ENST00000568095 THOC2Q8NI27 1593 aaKnown RBP8.48□□□□□ -1.05
LINC01541-202ENST00000568095 TOPBP1Q92547 1522 aa8.47□□□□□ -1.05
LINC01541-202ENST00000568095 CEP164Q9UPV0 1460 aa8.47□□□□□ -1.05
LINC01541-202ENST00000568095 WDR62O43379 1518 aa8.46□□□□□ -1.06
LINC01541-202ENST00000568095 KIF21BO75037 1637 aa8.45□□□□□ -1.06
LINC01541-202ENST00000568095 SOGA1O94964 1423 aa8.45□□□□□ -1.06
LINC01541-202ENST00000568095 TRIM41Q8WV44 630 aa8.45□□□□□ -1.06
LINC01541-202ENST00000568095 RUSC2Q8N2Y8 1516 aa8.45□□□□□ -1.06
LINC01541-202ENST00000568095 TARBP1Q13395 1621 aaKnown RBP8.45□□□□□ -1.06
LINC01541-202ENST00000568095 EEA1Q15075 1411 aa8.45□□□□□ -1.06
LINC01541-202ENST00000568095 NCBP3Q53F19 620 aaKnown RBP8.44□□□□□ -1.06
LINC01541-202ENST00000568095 PDS5BQ9NTI5 1447 aa8.44□□□□□ -1.06
LINC01541-202ENST00000568095 NEUROD1Q13562 356 aa8.44□□□□□ -1.06
LINC01541-202ENST00000568095 FGD5Q6ZNL6 1462 aa8.44□□□□□ -1.06
LINC01541-202ENST00000568095 ABCA5Q8WWZ7 1642 aa8.43□□□□□ -1.06
LINC01541-202ENST00000568095 POLA1P09884 1462 aaPredicted RBP8.43□□□□□ -1.06
LINC01541-202ENST00000568095 ABCA10Q8WWZ4 1543 aa8.42□□□□□ -1.06
LINC01541-202ENST00000568095 MRC2Q9UBG0 1479 aa8.41□□□□□ -1.06
LINC01541-202ENST00000568095 ERICH3Q5RHP9 1530 aa8.38□□□□□ -1.07
LINC01541-202ENST00000568095 PRXQ9BXM0 1461 aa8.38□□□□□ -1.07
LINC01541-202ENST00000568095 CUX2O14529 1486 aa8.37□□□□□ -1.07
LINC01541-202ENST00000568095 PBRM1Q86U86 1689 aa8.37□□□□□ -1.07
LINC01541-202ENST00000568095 DNAJC5Q9H3Z4 198 aa8.36□□□□□ -1.07
LINC01541-202ENST00000568095 GTF3C3Q9Y5Q9 886 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms