RNA–Protein interactions for RNA: ENST00000560357.5

HMBOX1-214, Transcript of homeobox containing 1, humanhuman

TSL 2

Gene HMBOX1, Length 979 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMBOX1-214ENST00000560357 AEBP2Q6ZN18 517 aaPredicted RBP18.2■□□□□ 0.5
HMBOX1-214ENST00000560357 CHIC1Q5VXU3 224 aa17.38■□□□□ 0.37
HMBOX1-214ENST00000560357 NISCHQ9Y2I1 1504 aa16.8■□□□□ 0.28
HMBOX1-214ENST00000560357 SENP3Q9H4L4 574 aaPredicted RBP15.55■□□□□ 0.08
HMBOX1-214ENST00000560357 PHF23Q9BUL5 403 aaPredicted RBP15.34■□□□□ 0.05
HMBOX1-214ENST00000560357 CCDC180Q9P1Z9 1646 aa14.71□□□□□ -0.05
HMBOX1-214ENST00000560357 FOXD1Q16676 465 aa14.46□□□□□ -0.09
HMBOX1-214ENST00000560357 ZCCHC6Q5VYS8 1495 aaKnown RBP14.06□□□□□ -0.16
HMBOX1-214ENST00000560357 ABCC9O60706 1549 aa14.05□□□□□ -0.16
HMBOX1-214ENST00000560357 PLPPR3Q6T4P5 718 aa13.93□□□□□ -0.18
HMBOX1-214ENST00000560357 DCAF1Q9Y4B6 1507 aa13.9□□□□□ -0.19
HMBOX1-214ENST00000560357 DCAF8L2P0C7V8 631 aa13.89□□□□□ -0.19
HMBOX1-214ENST00000560357 MYO15BQ96JP2 1530 aa13.8□□□□□ -0.2
HMBOX1-214ENST00000560357 NACADO15069 1562 aa13.75□□□□□ -0.21
HMBOX1-214ENST00000560357 RB1CC1Q8TDY2 1594 aa13.66□□□□□ -0.22
HMBOX1-214ENST00000560357 PPP6R1Q9UPN7 881 aa13.57□□□□□ -0.24
HMBOX1-214ENST00000560357 MSH5O43196 834 aa13.54□□□□□ -0.24
HMBOX1-214ENST00000560357 SHROOM4Q9ULL8 1493 aa13.54□□□□□ -0.24
HMBOX1-214ENST00000560357 ADRA2BP18089 450 aa13.5□□□□□ -0.25
HMBOX1-214ENST00000560357 PIAS4Q8N2W9 510 aaPredicted RBP13.49□□□□□ -0.25
HMBOX1-214ENST00000560357 SCRIBQ14160 1630 aa13.48□□□□□ -0.25
HMBOX1-214ENST00000560357 UNC13AQ9UPW8 1703 aa13.39□□□□□ -0.27
HMBOX1-214ENST00000560357 BICRAQ9NZM4 1560 aa13.27□□□□□ -0.29
HMBOX1-214ENST00000560357 PABPN1Q86U42 306 aaKnown RBP eCLIP13.22□□□□□ -0.29
HMBOX1-214ENST00000560357 POTEDQ86YR6 584 aa13.06□□□□□ -0.32
HMBOX1-214ENST00000560357 CECR2Q9BXF3 1484 aa13.05□□□□□ -0.32
HMBOX1-214ENST00000560357 BAZ1AQ9NRL2 1556 aaPredicted RBP12.97□□□□□ -0.33
HMBOX1-214ENST00000560357 RSF1Q96T23 1441 aaPredicted RBP12.96□□□□□ -0.33
HMBOX1-214ENST00000560357 MROH2BQ7Z745 1585 aa12.96□□□□□ -0.33
HMBOX1-214ENST00000560357 SUPT5HO00267 1087 aaKnown RBP12.96□□□□□ -0.33
HMBOX1-214ENST00000560357 SMARCA4P51532 1647 aa12.93□□□□□ -0.34
HMBOX1-214ENST00000560357 EIF4G1Q04637 1599 aaKnown RBP12.86□□□□□ -0.35
HMBOX1-214ENST00000560357 WIZO95785 1651 aa12.84□□□□□ -0.35
HMBOX1-214ENST00000560357 PEG3Q9GZU2 1588 aa12.8□□□□□ -0.36
HMBOX1-214ENST00000560357 ATAD2BQ9ULI0 1458 aa12.77□□□□□ -0.37
HMBOX1-214ENST00000560357 SMARCA2P51531 1590 aa12.76□□□□□ -0.37
HMBOX1-214ENST00000560357 CC2D2AQ9P2K1 1620 aa12.71□□□□□ -0.37
HMBOX1-214ENST00000560357 TOP2AP11388 1531 aaKnown RBP12.71□□□□□ -0.38
HMBOX1-214ENST00000560357 NCAPD3P42695 1498 aa12.7□□□□□ -0.38
HMBOX1-214ENST00000560357 BAZ1BQ9UIG0 1483 aaKnown RBP12.67□□□□□ -0.38
HMBOX1-214ENST00000560357 HMGXB3Q12766 1538 aa12.65□□□□□ -0.38
HMBOX1-214ENST00000560357 CCDC88BA6NC98 1476 aa12.58□□□□□ -0.4
HMBOX1-214ENST00000560357 DNAJC5BQ9UF47 199 aa12.56□□□□□ -0.4
HMBOX1-214ENST00000560357 SCAF1Q9H7N4 1312 aaKnown RBP12.43□□□□□ -0.42
HMBOX1-214ENST00000560357 MAPK8IP2Q13387 824 aaPredicted RBP12.37□□□□□ -0.43
HMBOX1-214ENST00000560357 CFTRP13569 1480 aa12.36□□□□□ -0.43
HMBOX1-214ENST00000560357 CADPSQ9ULU8 1353 aa12.35□□□□□ -0.43
HMBOX1-214ENST00000560357 DMRT2Q9Y5R5 561 aa12.35□□□□□ -0.43
HMBOX1-214ENST00000560357 PRDM2Q13029 1718 aa12.28□□□□□ -0.44
HMBOX1-214ENST00000560357 LAMC3Q9Y6N6 1575 aa12.28□□□□□ -0.44
HMBOX1-214ENST00000560357 NESP48681 1621 aa12.28□□□□□ -0.44
HMBOX1-214ENST00000560357 ABCC8Q09428 1581 aa12.24□□□□□ -0.45
HMBOX1-214ENST00000560357 FANCD2Q9BXW9 1451 aa12.21□□□□□ -0.46
HMBOX1-214ENST00000560357 TRIM41Q8WV44 630 aa12.2□□□□□ -0.46
HMBOX1-214ENST00000560357 WRNQ14191 1432 aaPredicted RBP eCLIP12.2□□□□□ -0.46
HMBOX1-214ENST00000560357 PPP4R3CPQ6ZMV5 832 aa12.19□□□□□ -0.46
HMBOX1-214ENST00000560357 PDS5BQ9NTI5 1447 aa12.19□□□□□ -0.46
HMBOX1-214ENST00000560357 SYNJ1O43426 1573 aa12.15□□□□□ -0.46
HMBOX1-214ENST00000560357 CEP164Q9UPV0 1460 aa12.14□□□□□ -0.47
HMBOX1-214ENST00000560357 KIF21AQ7Z4S6 1674 aa12.13□□□□□ -0.47
HMBOX1-214ENST00000560357 CUX1P39880 1505 aa12.13□□□□□ -0.47
HMBOX1-214ENST00000560357 TOP2BQ02880 1626 aa12.12□□□□□ -0.47
HMBOX1-214ENST00000560357 BIVM-ERCC5R4GMW8 1640 aa12.11□□□□□ -0.47
HMBOX1-214ENST00000560357 DNMBPQ6XZF7 1577 aa12.07□□□□□ -0.48
HMBOX1-214ENST00000560357 URB2Q14146 1524 aaKnown RBP12.06□□□□□ -0.48
HMBOX1-214ENST00000560357 TOPBP1Q92547 1522 aa12.06□□□□□ -0.48
HMBOX1-214ENST00000560357 ERCC6Q03468 1493 aa12.04□□□□□ -0.48
HMBOX1-214ENST00000560357 MRC2Q9UBG0 1479 aa12.04□□□□□ -0.48
HMBOX1-214ENST00000560357 FGD5Q6ZNL6 1462 aa12.02□□□□□ -0.49
HMBOX1-214ENST00000560357 SOGA1O94964 1423 aa11.99□□□□□ -0.49
HMBOX1-214ENST00000560357 WDR62O43379 1518 aa11.98□□□□□ -0.49
HMBOX1-214ENST00000560357 POLA1P09884 1462 aaPredicted RBP11.98□□□□□ -0.49
HMBOX1-214ENST00000560357 CNKSR2Q8WXI2 1034 aa11.98□□□□□ -0.49
HMBOX1-214ENST00000560357 THOC2Q8NI27 1593 aaKnown RBP11.97□□□□□ -0.49
HMBOX1-214ENST00000560357 RUSC2Q8N2Y8 1516 aa11.96□□□□□ -0.49
HMBOX1-214ENST00000560357 FAM9AQ8IZU1 332 aaPredicted RBP11.96□□□□□ -0.49
HMBOX1-214ENST00000560357 HOXD11P31277 338 aaPredicted RBP11.95□□□□□ -0.5
HMBOX1-214ENST00000560357 RAD54L2Q9Y4B4 1467 aa11.94□□□□□ -0.5
HMBOX1-214ENST00000560357 EEA1Q15075 1411 aa11.94□□□□□ -0.5
HMBOX1-214ENST00000560357 ABCA10Q8WWZ4 1543 aa11.91□□□□□ -0.5
HMBOX1-214ENST00000560357 CUX2O14529 1486 aa11.91□□□□□ -0.5
HMBOX1-214ENST00000560357 TARBP1Q13395 1621 aaKnown RBP11.9□□□□□ -0.5
HMBOX1-214ENST00000560357 KIF27Q86VH2 1401 aa11.9□□□□□ -0.5
HMBOX1-214ENST00000560357 CSRNP3Q8WYN3 585 aa11.9□□□□□ -0.5
HMBOX1-214ENST00000560357 WDR97A6NE52 1622 aa11.89□□□□□ -0.51
HMBOX1-214ENST00000560357 RNF216Q9NWF9 866 aaPredicted RBP11.87□□□□□ -0.51
HMBOX1-214ENST00000560357 IFT140Q96RY7 1462 aa11.87□□□□□ -0.51
HMBOX1-214ENST00000560357 LOC105371045A0A1W2PR82 267 aa11.86□□□□□ -0.51
HMBOX1-214ENST00000560357 TDRD9Q8NDG6 1382 aaKnown RBP11.84□□□□□ -0.51
HMBOX1-214ENST00000560357 IGF1RP08069 1367 aa11.83□□□□□ -0.52
HMBOX1-214ENST00000560357 ABCA5Q8WWZ7 1642 aa11.82□□□□□ -0.52
HMBOX1-214ENST00000560357 GAPVD1Q14C86 1478 aa11.81□□□□□ -0.52
HMBOX1-214ENST00000560357 ZNF608Q9ULD9 1512 aaPredicted RBP11.81□□□□□ -0.52
HMBOX1-214ENST00000560357 AQRO60306 1485 aaKnown RBP eCLIP11.79□□□□□ -0.52
HMBOX1-214ENST00000560357 PRXQ9BXM0 1461 aa11.79□□□□□ -0.52
HMBOX1-214ENST00000560357 KIF21BO75037 1637 aa11.78□□□□□ -0.52
HMBOX1-214ENST00000560357 EHMT2Q96KQ7 1210 aa11.78□□□□□ -0.52
HMBOX1-214ENST00000560357 ERICH3Q5RHP9 1530 aa11.77□□□□□ -0.52
HMBOX1-214ENST00000560357 NCBP3Q53F19 620 aaKnown RBP11.77□□□□□ -0.53
HMBOX1-214ENST00000560357 CARMIL1Q5VZK9 1371 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms