RNA–Protein interactions for RNA: ENST00000557566.1

SPTLC2-206, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

TSL 2

Gene SPTLC2, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-206ENST00000557566 AEBP2Q6ZN18 517 aaPredicted RBP21.99■■□□□ 1.11
SPTLC2-206ENST00000557566 CHIC1Q5VXU3 224 aa20.56■□□□□ 0.88
SPTLC2-206ENST00000557566 SENP3Q9H4L4 574 aaPredicted RBP18.84■□□□□ 0.61
SPTLC2-206ENST00000557566 PHF23Q9BUL5 403 aaPredicted RBP18.53■□□□□ 0.56
SPTLC2-206ENST00000557566 FOXD1Q16676 465 aa17.62■□□□□ 0.41
SPTLC2-206ENST00000557566 NISCHQ9Y2I1 1504 aa17.52■□□□□ 0.4
SPTLC2-206ENST00000557566 POTEDQ86YR6 584 aa17.4■□□□□ 0.38
SPTLC2-206ENST00000557566 MSH5O43196 834 aa16.68■□□□□ 0.26
SPTLC2-206ENST00000557566 PLPPR3Q6T4P5 718 aa16.54■□□□□ 0.24
SPTLC2-206ENST00000557566 ABCC9O60706 1549 aa16.5■□□□□ 0.23
SPTLC2-206ENST00000557566 PIAS4Q8N2W9 510 aaPredicted RBP16.38■□□□□ 0.21
SPTLC2-206ENST00000557566 PPP6R1Q9UPN7 881 aa16.1■□□□□ 0.17
SPTLC2-206ENST00000557566 ADRA2BP18089 450 aa16.04■□□□□ 0.16
SPTLC2-206ENST00000557566 CCDC180Q9P1Z9 1646 aa16.03■□□□□ 0.16
SPTLC2-206ENST00000557566 DNAJC5BQ9UF47 199 aa15.92■□□□□ 0.14
SPTLC2-206ENST00000557566 RB1CC1Q8TDY2 1594 aa15.51■□□□□ 0.07
SPTLC2-206ENST00000557566 NACADO15069 1562 aa15.26■□□□□ 0.03
SPTLC2-206ENST00000557566 PABPN1Q86U42 306 aaKnown RBP eCLIP15.25■□□□□ 0.03
SPTLC2-206ENST00000557566 UNC13AQ9UPW8 1703 aa15.17■□□□□ 0.02
SPTLC2-206ENST00000557566 DNAJC5Q9H3Z4 198 aa15.07■□□□□ 0
SPTLC2-206ENST00000557566 BICRAQ9NZM4 1560 aa15.04■□□□□ -0
SPTLC2-206ENST00000557566 DCAF8L2P0C7V8 631 aa15.01□□□□□ -0.01
SPTLC2-206ENST00000557566 CECR2Q9BXF3 1484 aa14.94□□□□□ -0.02
SPTLC2-206ENST00000557566 CC2D2AQ9P2K1 1620 aa14.91□□□□□ -0.02
SPTLC2-206ENST00000557566 MAPK8IP2Q13387 824 aaPredicted RBP14.88□□□□□ -0.03
SPTLC2-206ENST00000557566 MYO15BQ96JP2 1530 aa14.87□□□□□ -0.03
SPTLC2-206ENST00000557566 DMRT2Q9Y5R5 561 aa14.86□□□□□ -0.03
SPTLC2-206ENST00000557566 SHROOM4Q9ULL8 1493 aa14.83□□□□□ -0.03
SPTLC2-206ENST00000557566 EIF4G1Q04637 1599 aaKnown RBP14.74□□□□□ -0.05
SPTLC2-206ENST00000557566 SCAF1Q9H7N4 1312 aaKnown RBP14.66□□□□□ -0.06
SPTLC2-206ENST00000557566 CACNB1Q02641 598 aaPredicted RBP14.64□□□□□ -0.07
SPTLC2-206ENST00000557566 PPP4R3CPQ6ZMV5 832 aa14.57□□□□□ -0.08
SPTLC2-206ENST00000557566 SCRIBQ14160 1630 aa14.53□□□□□ -0.08
SPTLC2-206ENST00000557566 CUX2O14529 1486 aa14.5□□□□□ -0.09
SPTLC2-206ENST00000557566 DCAF1Q9Y4B6 1507 aa14.46□□□□□ -0.09
SPTLC2-206ENST00000557566 ZCCHC6Q5VYS8 1495 aaKnown RBP14.41□□□□□ -0.1
SPTLC2-206ENST00000557566 DCAF8L1A6NGE4 600 aa14.35□□□□□ -0.11
SPTLC2-206ENST00000557566 ERCC6Q03468 1493 aa14.32□□□□□ -0.12
SPTLC2-206ENST00000557566 KCNA4P22459 653 aa14.24□□□□□ -0.13
SPTLC2-206ENST00000557566 NCBP3Q53F19 620 aaKnown RBP14.24□□□□□ -0.13
SPTLC2-206ENST00000557566 TRIM41Q8WV44 630 aa14.19□□□□□ -0.14
SPTLC2-206ENST00000557566 RNF39Q9H2S5 420 aa14.18□□□□□ -0.14
SPTLC2-206ENST00000557566 CNKSR2Q8WXI2 1034 aa14.15□□□□□ -0.14
SPTLC2-206ENST00000557566 HOXD11P31277 338 aaPredicted RBP14.1□□□□□ -0.15
SPTLC2-206ENST00000557566 NCAPD3P42695 1498 aa14.06□□□□□ -0.16
SPTLC2-206ENST00000557566 THOC2Q8NI27 1593 aaKnown RBP14.02□□□□□ -0.16
SPTLC2-206ENST00000557566 NESP48681 1621 aa14.01□□□□□ -0.17
SPTLC2-206ENST00000557566 NPM3O75607 178 aaKnown RBP13.97□□□□□ -0.17
SPTLC2-206ENST00000557566 HMGXB3Q12766 1538 aa13.95□□□□□ -0.18
SPTLC2-206ENST00000557566 ATAD2BQ9ULI0 1458 aa13.94□□□□□ -0.18
SPTLC2-206ENST00000557566 C1QBPQ07021 282 aaKnown RBP13.94□□□□□ -0.18
SPTLC2-206ENST00000557566 SMARCA2P51531 1590 aa13.91□□□□□ -0.18
SPTLC2-206ENST00000557566 LAMC3Q9Y6N6 1575 aa13.88□□□□□ -0.19
SPTLC2-206ENST00000557566 RNF216Q9NWF9 866 aaPredicted RBP13.87□□□□□ -0.19
SPTLC2-206ENST00000557566 KIF21AQ7Z4S6 1674 aa13.87□□□□□ -0.19
SPTLC2-206ENST00000557566 SMARCA4P51532 1647 aa13.81□□□□□ -0.2
SPTLC2-206ENST00000557566 BAZ1BQ9UIG0 1483 aaKnown RBP13.8□□□□□ -0.2
SPTLC2-206ENST00000557566 PDS5BQ9NTI5 1447 aa13.8□□□□□ -0.2
SPTLC2-206ENST00000557566 BAZ1AQ9NRL2 1556 aaPredicted RBP13.79□□□□□ -0.2
SPTLC2-206ENST00000557566 OSCARQ8IYS5 282 aa13.71□□□□□ -0.21
SPTLC2-206ENST00000557566 MRC2Q9UBG0 1479 aa13.71□□□□□ -0.21
SPTLC2-206ENST00000557566 WDR62O43379 1518 aa13.7□□□□□ -0.22
SPTLC2-206ENST00000557566 PEG3Q9GZU2 1588 aa13.68□□□□□ -0.22
SPTLC2-206ENST00000557566 RIMBP3CA6NJZ7 1639 aa13.61□□□□□ -0.23
SPTLC2-206ENST00000557566 RIMBP3BA6NNM3 1639 aa13.61□□□□□ -0.23
SPTLC2-206ENST00000557566 RIMBP3Q9UFD9 1639 aa13.61□□□□□ -0.23
SPTLC2-206ENST00000557566 CADPSQ9ULU8 1353 aa13.61□□□□□ -0.23
SPTLC2-206ENST00000557566 SLC4A1APQ9BWU0 796 aaKnown RBP13.61□□□□□ -0.23
SPTLC2-206ENST00000557566 CEP164Q9UPV0 1460 aa13.55□□□□□ -0.24
SPTLC2-206ENST00000557566 EHMT2Q96KQ7 1210 aa13.51□□□□□ -0.25
SPTLC2-206ENST00000557566 ARHGEF11O15085 1522 aa13.5□□□□□ -0.25
SPTLC2-206ENST00000557566 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.49□□□□□ -0.258e-9■□□□□ 9.3
SPTLC2-206ENST00000557566 POTEHQ6S545 545 aa13.48□□□□□ -0.25
SPTLC2-206ENST00000557566 MROH2BQ7Z745 1585 aa13.48□□□□□ -0.25
SPTLC2-206ENST00000557566 TRHP20396 242 aaPredicted RBP13.47□□□□□ -0.25
SPTLC2-206ENST00000557566 FANCD2Q9BXW9 1451 aa13.47□□□□□ -0.25
SPTLC2-206ENST00000557566 CYB5RLQ6IPT4 315 aa13.41□□□□□ -0.26
SPTLC2-206ENST00000557566 URB2Q14146 1524 aaKnown RBP13.38□□□□□ -0.27
SPTLC2-206ENST00000557566 CFTRP13569 1480 aa13.34□□□□□ -0.27
SPTLC2-206ENST00000557566 ARAP1Q96P48 1450 aa13.32□□□□□ -0.28
SPTLC2-206ENST00000557566 WIZO95785 1651 aa13.31□□□□□ -0.28
SPTLC2-206ENST00000557566 CSRNP3Q8WYN3 585 aa13.31□□□□□ -0.28
SPTLC2-206ENST00000557566 IFT140Q96RY7 1462 aa13.29□□□□□ -0.28
SPTLC2-206ENST00000557566 ZNF608Q9ULD9 1512 aaPredicted RBP13.29□□□□□ -0.28
SPTLC2-206ENST00000557566 CHD1O14646 1710 aa13.26□□□□□ -0.29
SPTLC2-206ENST00000557566 RSF1Q96T23 1441 aaPredicted RBP13.25□□□□□ -0.29
SPTLC2-206ENST00000557566 PRDM2Q13029 1718 aa13.25□□□□□ -0.29
SPTLC2-206ENST00000557566 EIF4G3O43432 1585 aaKnown RBP13.24□□□□□ -0.29
SPTLC2-206ENST00000557566 TOPBP1Q92547 1522 aa13.14□□□□□ -0.31
SPTLC2-206ENST00000557566 SLC4A2P04920 1241 aa13.14□□□□□ -0.31
SPTLC2-206ENST00000557566 FBLN2P98095 1184 aa13.14□□□□□ -0.31
SPTLC2-206ENST00000557566 CAPN15O75808 1086 aa13.13□□□□□ -0.31
SPTLC2-206ENST00000557566 U3KPZ7 1027 aaPredicted RBP13.13□□□□□ -0.31
SPTLC2-206ENST00000557566 DSG3P32926 999 aa13.12□□□□□ -0.31
SPTLC2-206ENST00000557566 FOXD4L1Q9NU39 408 aa13.12□□□□□ -0.31
SPTLC2-206ENST00000557566 ABCC8Q09428 1581 aa13.11□□□□□ -0.31
SPTLC2-206ENST00000557566 ZBTB22O15209 634 aa13.11□□□□□ -0.31
SPTLC2-206ENST00000557566 TOP2AP11388 1531 aaKnown RBP13.11□□□□□ -0.31
SPTLC2-206ENST00000557566 AQRO60306 1485 aaKnown RBP eCLIP13.1□□□□□ -0.31
SPTLC2-206ENST00000557566 SPINK5Q9NQ38 1064 aaPredicted RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms