RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 NISCHQ9Y2I1 1504 aa12.65□□□□□ -0.38
SYNE2-225ENST00000557060 AEBP2Q6ZN18 517 aaPredicted RBP11.59□□□□□ -0.55
SYNE2-225ENST00000557060 CHIC1Q5VXU3 224 aa11.5□□□□□ -0.57
SYNE2-225ENST00000557060 DCAF8L2P0C7V8 631 aa10.99□□□□□ -0.65
SYNE2-225ENST00000557060 SHROOM4Q9ULL8 1493 aa10.94□□□□□ -0.66
SYNE2-225ENST00000557060 CCDC180Q9P1Z9 1646 aa10.74□□□□□ -0.69
SYNE2-225ENST00000557060 SUPT5HO00267 1087 aaKnown RBP10.62□□□□□ -0.71
SYNE2-225ENST00000557060 ZCCHC6Q5VYS8 1495 aaKnown RBP10.62□□□□□ -0.71
SYNE2-225ENST00000557060 ABCC9O60706 1549 aa10.48□□□□□ -0.73
SYNE2-225ENST00000557060 PHF23Q9BUL5 403 aaPredicted RBP10.37□□□□□ -0.75
SYNE2-225ENST00000557060 SCRIBQ14160 1630 aa10.26□□□□□ -0.77
SYNE2-225ENST00000557060 DCAF1Q9Y4B6 1507 aa10.24□□□□□ -0.77
SYNE2-225ENST00000557060 PABPN1Q86U42 306 aaKnown RBP eCLIP10.07□□□□□ -0.8
SYNE2-225ENST00000557060 NACADO15069 1562 aa10.06□□□□□ -0.8
SYNE2-225ENST00000557060 MYO15BQ96JP2 1530 aa10.01□□□□□ -0.81
SYNE2-225ENST00000557060 RB1CC1Q8TDY2 1594 aa9.99□□□□□ -0.81
SYNE2-225ENST00000557060 CECR2Q9BXF3 1484 aa9.99□□□□□ -0.81
SYNE2-225ENST00000557060 RSF1Q96T23 1441 aaPredicted RBP9.97□□□□□ -0.81
SYNE2-225ENST00000557060 EHMT2Q96KQ7 1210 aa9.92□□□□□ -0.82
SYNE2-225ENST00000557060 MROH2BQ7Z745 1585 aa9.88□□□□□ -0.83
SYNE2-225ENST00000557060 FAM9AQ8IZU1 332 aaPredicted RBP9.87□□□□□ -0.83
SYNE2-225ENST00000557060 LOC105371045A0A1W2PR82 267 aa9.85□□□□□ -0.83
SYNE2-225ENST00000557060 TRIM41Q8WV44 630 aa9.82□□□□□ -0.84
SYNE2-225ENST00000557060 WIZO95785 1651 aa9.81□□□□□ -0.84
SYNE2-225ENST00000557060 UNC13AQ9UPW8 1703 aa9.78□□□□□ -0.84
SYNE2-225ENST00000557060 BAZ1AQ9NRL2 1556 aaPredicted RBP9.73□□□□□ -0.85
SYNE2-225ENST00000557060 BICRAQ9NZM4 1560 aa9.71□□□□□ -0.86
SYNE2-225ENST00000557060 SMARCA4P51532 1647 aa9.68□□□□□ -0.86
SYNE2-225ENST00000557060 CCDC88BA6NC98 1476 aa9.62□□□□□ -0.87
SYNE2-225ENST00000557060 PCGF6Q9BYE7 350 aa9.61□□□□□ -0.87
SYNE2-225ENST00000557060 TOP2AP11388 1531 aaKnown RBP9.58□□□□□ -0.88
SYNE2-225ENST00000557060 ABCC8Q09428 1581 aa9.57□□□□□ -0.88
SYNE2-225ENST00000557060 PPARGC1BQ86YN6 1023 aaKnown RBP9.55□□□□□ -0.88
SYNE2-225ENST00000557060 SMARCA2P51531 1590 aa9.54□□□□□ -0.88
SYNE2-225ENST00000557060 BAZ1BQ9UIG0 1483 aaKnown RBP9.53□□□□□ -0.88
SYNE2-225ENST00000557060 ATAD2BQ9ULI0 1458 aa9.53□□□□□ -0.88
SYNE2-225ENST00000557060 TTBK1Q5TCY1 1321 aaPredicted RBP9.51□□□□□ -0.89
SYNE2-225ENST00000557060 RANGAP1P46060 587 aaPredicted RBP9.49□□□□□ -0.89
SYNE2-225ENST00000557060 PLPPR3Q6T4P5 718 aa9.48□□□□□ -0.89
SYNE2-225ENST00000557060 SENP3Q9H4L4 574 aaPredicted RBP9.46□□□□□ -0.89
SYNE2-225ENST00000557060 EIF4G1Q04637 1599 aaKnown RBP9.45□□□□□ -0.9
SYNE2-225ENST00000557060 UBTFP17480 764 aaKnown RBP9.45□□□□□ -0.9
SYNE2-225ENST00000557060 SOGA1O94964 1423 aa9.45□□□□□ -0.9
SYNE2-225ENST00000557060 RUSC2Q8N2Y8 1516 aa9.41□□□□□ -0.9
SYNE2-225ENST00000557060 WRNQ14191 1432 aaPredicted RBP eCLIP9.41□□□□□ -0.9
SYNE2-225ENST00000557060 PEG3Q9GZU2 1588 aa9.4□□□□□ -0.9
SYNE2-225ENST00000557060 CSRNP3Q8WYN3 585 aa9.38□□□□□ -0.91
SYNE2-225ENST00000557060 DNAJC5BQ9UF47 199 aa9.35□□□□□ -0.91
SYNE2-225ENST00000557060 NCAPD3P42695 1498 aa9.35□□□□□ -0.91
SYNE2-225ENST00000557060 TRIM26Q12899 539 aaPredicted RBP9.34□□□□□ -0.91
SYNE2-225ENST00000557060 SYNJ1O43426 1573 aa9.33□□□□□ -0.92
SYNE2-225ENST00000557060 CC2D2AQ9P2K1 1620 aa9.31□□□□□ -0.92
SYNE2-225ENST00000557060 HRCP23327 699 aa9.27□□□□□ -0.92
SYNE2-225ENST00000557060 HMGXB3Q12766 1538 aa9.27□□□□□ -0.93
SYNE2-225ENST00000557060 CEP162Q5TB80 1403 aa9.25□□□□□ -0.93
SYNE2-225ENST00000557060 ADRA2BP18089 450 aa9.23□□□□□ -0.93
SYNE2-225ENST00000557060 NESP48681 1621 aa9.23□□□□□ -0.93
SYNE2-225ENST00000557060 CADPSQ9ULU8 1353 aa9.23□□□□□ -0.93
SYNE2-225ENST00000557060 CFTRP13569 1480 aa9.22□□□□□ -0.93
SYNE2-225ENST00000557060 RAPGEF2Q9Y4G8 1499 aa9.2□□□□□ -0.94
SYNE2-225ENST00000557060 EEA1Q15075 1411 aa9.2□□□□□ -0.94
SYNE2-225ENST00000557060 GOLGA3Q08378 1498 aa9.2□□□□□ -0.94
SYNE2-225ENST00000557060 CUX1P39880 1505 aa9.2□□□□□ -0.94
SYNE2-225ENST00000557060 TNIKQ9UKE5 1360 aa9.19□□□□□ -0.94
SYNE2-225ENST00000557060 TOP2BQ02880 1626 aa9.17□□□□□ -0.94
SYNE2-225ENST00000557060 CEP164Q9UPV0 1460 aa9.16□□□□□ -0.94
SYNE2-225ENST00000557060 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.16□□□□□ -0.94
SYNE2-225ENST00000557060 APLP2Q06481 763 aa9.16□□□□□ -0.94
SYNE2-225ENST00000557060 FANCD2Q9BXW9 1451 aa9.15□□□□□ -0.94
SYNE2-225ENST00000557060 CLIP1P30622 1438 aa9.15□□□□□ -0.95
SYNE2-225ENST00000557060 CUX2O14529 1486 aa9.15□□□□□ -0.95
SYNE2-225ENST00000557060 KIF27Q86VH2 1401 aa9.14□□□□□ -0.95
SYNE2-225ENST00000557060 P3H3Q8IVL6 736 aa9.14□□□□□ -0.95
SYNE2-225ENST00000557060 ATP1B4Q9UN42 357 aaPredicted RBP9.13□□□□□ -0.95
SYNE2-225ENST00000557060 FGD5Q6ZNL6 1462 aa9.11□□□□□ -0.95
SYNE2-225ENST00000557060 HNRNPUL2Q1KMD3 747 aaKnown RBP9.11□□□□□ -0.95
SYNE2-225ENST00000557060 RAD54L2Q9Y4B4 1467 aa9.11□□□□□ -0.95
SYNE2-225ENST00000557060 CCER1Q8TC90 406 aaPredicted RBP9.1□□□□□ -0.95
SYNE2-225ENST00000557060 PPP6R1Q9UPN7 881 aa9.1□□□□□ -0.95
SYNE2-225ENST00000557060 BIVM-ERCC5R4GMW8 1640 aa9.09□□□□□ -0.95
SYNE2-225ENST00000557060 TDRD9Q8NDG6 1382 aaKnown RBP9.07□□□□□ -0.96
SYNE2-225ENST00000557060 IGF1RP08069 1367 aa9.06□□□□□ -0.96
SYNE2-225ENST00000557060 KIF21BO75037 1637 aa9.06□□□□□ -0.96
SYNE2-225ENST00000557060 CARMIL1Q5VZK9 1371 aa9.05□□□□□ -0.96
SYNE2-225ENST00000557060 PRXQ9BXM0 1461 aa9.04□□□□□ -0.96
SYNE2-225ENST00000557060 ITGAEP38570 1179 aa9.04□□□□□ -0.96
SYNE2-225ENST00000557060 TOPBP1Q92547 1522 aa9.03□□□□□ -0.96
SYNE2-225ENST00000557060 POLA1P09884 1462 aaPredicted RBP9.03□□□□□ -0.96
SYNE2-225ENST00000557060 KANK4Q5T7N3 995 aaPredicted RBP9.02□□□□□ -0.97
SYNE2-225ENST00000557060 VPS8Q8N3P4 1428 aa9.02□□□□□ -0.97
SYNE2-225ENST00000557060 PDS5BQ9NTI5 1447 aa9.02□□□□□ -0.97
SYNE2-225ENST00000557060 URB2Q14146 1524 aaKnown RBP9□□□□□ -0.97
SYNE2-225ENST00000557060 ARAP1Q96P48 1450 aa8.99□□□□□ -0.97
SYNE2-225ENST00000557060 ARID3CA6NKF2 412 aa8.99□□□□□ -0.97
SYNE2-225ENST00000557060 PRDM2Q13029 1718 aa8.98□□□□□ -0.97
SYNE2-225ENST00000557060 KCNA4P22459 653 aa8.97□□□□□ -0.97
SYNE2-225ENST00000557060 DNMBPQ6XZF7 1577 aa8.97□□□□□ -0.97
SYNE2-225ENST00000557060 LAMC3Q9Y6N6 1575 aa8.97□□□□□ -0.97
SYNE2-225ENST00000557060 FBLN2P98095 1184 aa8.97□□□□□ -0.97
SYNE2-225ENST00000557060 ERICH3Q5RHP9 1530 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms