RNA–Protein interactions for RNA: ENST00000556245.1

PRKCH-221, Transcript of protein kinase C eta, humanhuman

TSL 2

Gene PRKCH, Length 2,745 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-221ENST00000556245 NISCHQ9Y2I1 1504 aa24.62■■□□□ 1.53
PRKCH-221ENST00000556245 CCDC180Q9P1Z9 1646 aa21.11■□□□□ 0.97
PRKCH-221ENST00000556245 ZCCHC6Q5VYS8 1495 aaKnown RBP20.81■□□□□ 0.92
PRKCH-221ENST00000556245 SHROOM4Q9ULL8 1493 aa20.69■□□□□ 0.9
PRKCH-221ENST00000556245 DCAF1Q9Y4B6 1507 aa20.31■□□□□ 0.84
PRKCH-221ENST00000556245 DCAF8L2P0C7V8 631 aa20.28■□□□□ 0.84
PRKCH-221ENST00000556245 SUPT5HO00267 1087 aaKnown RBP20.25■□□□□ 0.83
PRKCH-221ENST00000556245 MYO15BQ96JP2 1530 aa19.8■□□□□ 0.76
PRKCH-221ENST00000556245 CHIC1Q5VXU3 224 aa19.68■□□□□ 0.74
PRKCH-221ENST00000556245 ABCC9O60706 1549 aa19.61■□□□□ 0.73
PRKCH-221ENST00000556245 SCRIBQ14160 1630 aa19.6■□□□□ 0.73
PRKCH-221ENST00000556245 NACADO15069 1562 aa19.53■□□□□ 0.72
PRKCH-221ENST00000556245 RSF1Q96T23 1441 aaPredicted RBP19.38■□□□□ 0.69
PRKCH-221ENST00000556245 RB1CC1Q8TDY2 1594 aa19.22■□□□□ 0.67
PRKCH-221ENST00000556245 CECR2Q9BXF3 1484 aa19.11■□□□□ 0.65
PRKCH-221ENST00000556245 MROH2BQ7Z745 1585 aa19.07■□□□□ 0.64
PRKCH-221ENST00000556245 LOC105371045A0A1W2PR82 267 aa19■□□□□ 0.63
PRKCH-221ENST00000556245 WIZO95785 1651 aa18.96■□□□□ 0.63
PRKCH-221ENST00000556245 BAZ1AQ9NRL2 1556 aaPredicted RBP18.96■□□□□ 0.63
PRKCH-221ENST00000556245 TRIM41Q8WV44 630 aa18.96■□□□□ 0.63
PRKCH-221ENST00000556245 PCGF6Q9BYE7 350 aa18.87■□□□□ 0.61
PRKCH-221ENST00000556245 UNC13AQ9UPW8 1703 aa18.85■□□□□ 0.61
PRKCH-221ENST00000556245 HRCP23327 699 aa18.84■□□□□ 0.61
PRKCH-221ENST00000556245 SMARCA4P51532 1647 aa18.79■□□□□ 0.6
PRKCH-221ENST00000556245 TOP2AP11388 1531 aaKnown RBP18.75■□□□□ 0.59
PRKCH-221ENST00000556245 EIF4G1Q04637 1599 aaKnown RBP18.69■□□□□ 0.58
PRKCH-221ENST00000556245 FAM9AQ8IZU1 332 aaPredicted RBP18.68■□□□□ 0.58
PRKCH-221ENST00000556245 TRIM26Q12899 539 aaPredicted RBP18.65■□□□□ 0.58
PRKCH-221ENST00000556245 BICRAQ9NZM4 1560 aa18.62■□□□□ 0.57
PRKCH-221ENST00000556245 SMARCA2P51531 1590 aa18.6■□□□□ 0.57
PRKCH-221ENST00000556245 CCDC88BA6NC98 1476 aa18.6■□□□□ 0.57
PRKCH-221ENST00000556245 PABPN1Q86U42 306 aaKnown RBP eCLIP18.54■□□□□ 0.56
PRKCH-221ENST00000556245 PEG3Q9GZU2 1588 aa18.48■□□□□ 0.55
PRKCH-221ENST00000556245 ABCC8Q09428 1581 aa18.45■□□□□ 0.54
PRKCH-221ENST00000556245 EHMT2Q96KQ7 1210 aa18.43■□□□□ 0.54
PRKCH-221ENST00000556245 PPARGC1BQ86YN6 1023 aaKnown RBP18.32■□□□□ 0.52
PRKCH-221ENST00000556245 ATAD2BQ9ULI0 1458 aa18.32■□□□□ 0.52
PRKCH-221ENST00000556245 EEA1Q15075 1411 aa18.32■□□□□ 0.52
PRKCH-221ENST00000556245 BAZ1BQ9UIG0 1483 aaKnown RBP18.28■□□□□ 0.52
PRKCH-221ENST00000556245 ZEB1P37275 1124 aaPredicted RBP18.27■□□□□ 0.51
PRKCH-221ENST00000556245 SOGA1O94964 1423 aa18.24■□□□□ 0.51
PRKCH-221ENST00000556245 WRNQ14191 1432 aaPredicted RBP eCLIP18.24■□□□□ 0.51
PRKCH-221ENST00000556245 CSRNP3Q8WYN3 585 aa18.2■□□□□ 0.5
PRKCH-221ENST00000556245 TNIKQ9UKE5 1360 aa18.18■□□□□ 0.5
PRKCH-221ENST00000556245 CEP162Q5TB80 1403 aa18.15■□□□□ 0.5
PRKCH-221ENST00000556245 RUSC2Q8N2Y8 1516 aa18.14■□□□□ 0.49
PRKCH-221ENST00000556245 SYNJ1O43426 1573 aa18.12■□□□□ 0.49
PRKCH-221ENST00000556245 GOLGA3Q08378 1498 aa18.12■□□□□ 0.49
PRKCH-221ENST00000556245 UBTFP17480 764 aaKnown RBP18.07■□□□□ 0.48
PRKCH-221ENST00000556245 HMGXB3Q12766 1538 aa18.05■□□□□ 0.48
PRKCH-221ENST00000556245 CEP164Q9UPV0 1460 aa18.04■□□□□ 0.48
PRKCH-221ENST00000556245 NCAPD3P42695 1498 aa18.03■□□□□ 0.48
PRKCH-221ENST00000556245 KIF21BO75037 1637 aa18.03■□□□□ 0.48
PRKCH-221ENST00000556245 TOP2BQ02880 1626 aa17.98■□□□□ 0.47
PRKCH-221ENST00000556245 BIVM-ERCC5R4GMW8 1640 aa17.93■□□□□ 0.46
PRKCH-221ENST00000556245 CLIP1P30622 1438 aa17.86■□□□□ 0.45
PRKCH-221ENST00000556245 CCER1Q8TC90 406 aaPredicted RBP17.85■□□□□ 0.45
PRKCH-221ENST00000556245 RAPGEF2Q9Y4G8 1499 aa17.84■□□□□ 0.45
PRKCH-221ENST00000556245 TTBK1Q5TCY1 1321 aaPredicted RBP17.83■□□□□ 0.45
PRKCH-221ENST00000556245 CFTRP13569 1480 aa17.83■□□□□ 0.44
PRKCH-221ENST00000556245 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.83■□□□□ 0.44
PRKCH-221ENST00000556245 VPS8Q8N3P4 1428 aa17.79■□□□□ 0.44
PRKCH-221ENST00000556245 CUX1P39880 1505 aa17.78■□□□□ 0.44
PRKCH-221ENST00000556245 ERICH3Q5RHP9 1530 aa17.78■□□□□ 0.44
PRKCH-221ENST00000556245 PRDM2Q13029 1718 aa17.74■□□□□ 0.43
PRKCH-221ENST00000556245 PRXQ9BXM0 1461 aa17.74■□□□□ 0.43
PRKCH-221ENST00000556245 KIF27Q86VH2 1401 aa17.72■□□□□ 0.43
PRKCH-221ENST00000556245 APLP2Q06481 763 aa17.71■□□□□ 0.43
PRKCH-221ENST00000556245 CADPSQ9ULU8 1353 aa17.65■□□□□ 0.42
PRKCH-221ENST00000556245 RANGAP1P46060 587 aaPredicted RBP17.62■□□□□ 0.41
PRKCH-221ENST00000556245 CC2D2AQ9P2K1 1620 aa17.6■□□□□ 0.41
PRKCH-221ENST00000556245 ARAP1Q96P48 1450 aa17.57■□□□□ 0.4
PRKCH-221ENST00000556245 CUX2O14529 1486 aa17.53■□□□□ 0.4
PRKCH-221ENST00000556245 HNRNPUL2Q1KMD3 747 aaKnown RBP17.53■□□□□ 0.4
PRKCH-221ENST00000556245 FGD5Q6ZNL6 1462 aa17.5■□□□□ 0.39
PRKCH-221ENST00000556245 IGF1RP08069 1367 aa17.48■□□□□ 0.39
PRKCH-221ENST00000556245 FANCD2Q9BXW9 1451 aa17.46■□□□□ 0.39
PRKCH-221ENST00000556245 ARHGAP35Q9NRY4 1499 aa17.45■□□□□ 0.38
PRKCH-221ENST00000556245 CARMIL1Q5VZK9 1371 aa17.43■□□□□ 0.38
PRKCH-221ENST00000556245 DIEXFQ68CQ4 756 aaKnown RBP17.41■□□□□ 0.38
PRKCH-221ENST00000556245 DNMBPQ6XZF7 1577 aa17.4■□□□□ 0.38
PRKCH-221ENST00000556245 KANK4Q5T7N3 995 aaPredicted RBP17.38■□□□□ 0.37
PRKCH-221ENST00000556245 ZNF316A6NFI3 1004 aaPredicted RBP17.35■□□□□ 0.37
PRKCH-221ENST00000556245 RRBP1Q9P2E9 1410 aaKnown RBP17.35■□□□□ 0.37
PRKCH-221ENST00000556245 TOPBP1Q92547 1522 aa17.34■□□□□ 0.37
PRKCH-221ENST00000556245 ABCA10Q8WWZ4 1543 aa17.33■□□□□ 0.37
PRKCH-221ENST00000556245 MAP3K1Q13233 1512 aa17.32■□□□□ 0.36
PRKCH-221ENST00000556245 CLSPNQ9HAW4 1339 aa17.32■□□□□ 0.36
PRKCH-221ENST00000556245 POLA1P09884 1462 aaPredicted RBP17.31■□□□□ 0.36
PRKCH-221ENST00000556245 LAMC3Q9Y6N6 1575 aa17.31■□□□□ 0.36
PRKCH-221ENST00000556245 NESP48681 1621 aa17.3■□□□□ 0.36
PRKCH-221ENST00000556245 RAD54L2Q9Y4B4 1467 aa17.29■□□□□ 0.36
PRKCH-221ENST00000556245 CCNB3Q8WWL7 1395 aa17.28■□□□□ 0.36
PRKCH-221ENST00000556245 TIAM1Q13009 1591 aa17.28■□□□□ 0.36
PRKCH-221ENST00000556245 FHAD1B1AJZ9 1412 aa17.27■□□□□ 0.36
PRKCH-221ENST00000556245 CUL7Q14999 1698 aa17.26■□□□□ 0.35
PRKCH-221ENST00000556245 DHX57Q6P158 1386 aaKnown RBP17.23■□□□□ 0.35
PRKCH-221ENST00000556245 EFCAB5A4FU69 1503 aa17.21■□□□□ 0.35
PRKCH-221ENST00000556245 LRRC9Q6ZRR7 1453 aa17.2■□□□□ 0.34
PRKCH-221ENST00000556245 URB2Q14146 1524 aaKnown RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms