RNA–Protein interactions for RNA: ENST00000556066.1

PSEN1-216, Transcript of presenilin 1, humanhuman

TSL 3

Gene PSEN1, Length 612 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-216ENST00000556066 AEBP2Q6ZN18 517 aaPredicted RBP20.24■□□□□ 0.83
PSEN1-216ENST00000556066 CHIC1Q5VXU3 224 aa19.19■□□□□ 0.66
PSEN1-216ENST00000556066 SENP3Q9H4L4 574 aaPredicted RBP17.56■□□□□ 0.4
PSEN1-216ENST00000556066 PHF23Q9BUL5 403 aaPredicted RBP17.19■□□□□ 0.34
PSEN1-216ENST00000556066 NISCHQ9Y2I1 1504 aa16.57■□□□□ 0.24
PSEN1-216ENST00000556066 FOXD1Q16676 465 aa16.26■□□□□ 0.19
PSEN1-216ENST00000556066 POTEDQ86YR6 584 aa15.61■□□□□ 0.09
PSEN1-216ENST00000556066 MSH5O43196 834 aa15.53■□□□□ 0.08
PSEN1-216ENST00000556066 PIAS4Q8N2W9 510 aaPredicted RBP15.22■□□□□ 0.03
PSEN1-216ENST00000556066 PLPPR3Q6T4P5 718 aa15.13■□□□□ 0.01
PSEN1-216ENST00000556066 ABCC9O60706 1549 aa14.9□□□□□ -0.02
PSEN1-216ENST00000556066 CCDC180Q9P1Z9 1646 aa14.86□□□□□ -0.03
PSEN1-216ENST00000556066 ADRA2BP18089 450 aa14.86□□□□□ -0.03
PSEN1-216ENST00000556066 PPP6R1Q9UPN7 881 aa14.86□□□□□ -0.03
PSEN1-216ENST00000556066 DNAJC5BQ9UF47 199 aa14.35□□□□□ -0.11
PSEN1-216ENST00000556066 RB1CC1Q8TDY2 1594 aa14.12□□□□□ -0.15
PSEN1-216ENST00000556066 DCAF8L2P0C7V8 631 aa14.05□□□□□ -0.16
PSEN1-216ENST00000556066 NACADO15069 1562 aa14.01□□□□□ -0.17
PSEN1-216ENST00000556066 PABPN1Q86U42 306 aaKnown RBP eCLIP13.89□□□□□ -0.19
PSEN1-216ENST00000556066 SCAF1Q9H7N4 1312 aaKnown RBP13.86□□□□□ -0.19
PSEN1-216ENST00000556066 UNC13AQ9UPW8 1703 aa13.85□□□□□ -0.19
PSEN1-216ENST00000556066 MYO15BQ96JP2 1530 aa13.8□□□□□ -0.2
PSEN1-216ENST00000556066 DMRT2Q9Y5R5 561 aa13.79□□□□□ -0.2
PSEN1-216ENST00000556066 ZCCHC6Q5VYS8 1495 aaKnown RBP13.74□□□□□ -0.21
PSEN1-216ENST00000556066 MAPK8IP2Q13387 824 aaPredicted RBP13.72□□□□□ -0.21
PSEN1-216ENST00000556066 BICRAQ9NZM4 1560 aa13.69□□□□□ -0.22
PSEN1-216ENST00000556066 DCAF1Q9Y4B6 1507 aa13.65□□□□□ -0.22
PSEN1-216ENST00000556066 SCRIBQ14160 1630 aa13.58□□□□□ -0.24
PSEN1-216ENST00000556066 CACNB1Q02641 598 aaPredicted RBP13.55□□□□□ -0.24
PSEN1-216ENST00000556066 SHROOM4Q9ULL8 1493 aa13.46□□□□□ -0.25
PSEN1-216ENST00000556066 CECR2Q9BXF3 1484 aa13.45□□□□□ -0.26
PSEN1-216ENST00000556066 CC2D2AQ9P2K1 1620 aa13.41□□□□□ -0.26
PSEN1-216ENST00000556066 DCAF8L1A6NGE4 600 aa13.38□□□□□ -0.27
PSEN1-216ENST00000556066 EIF4G1Q04637 1599 aaKnown RBP13.35□□□□□ -0.27
PSEN1-216ENST00000556066 DNAJC5Q9H3Z4 198 aa13.33□□□□□ -0.28
PSEN1-216ENST00000556066 PPP4R3CPQ6ZMV5 832 aa13.15□□□□□ -0.3
PSEN1-216ENST00000556066 HOXD11P31277 338 aaPredicted RBP13.13□□□□□ -0.31
PSEN1-216ENST00000556066 RNF39Q9H2S5 420 aa13.1□□□□□ -0.31
PSEN1-216ENST00000556066 CNKSR2Q8WXI2 1034 aa13.05□□□□□ -0.32
PSEN1-216ENST00000556066 C1QBPQ07021 282 aaKnown RBP12.99□□□□□ -0.33
PSEN1-216ENST00000556066 RNF216Q9NWF9 866 aaPredicted RBP12.99□□□□□ -0.33
PSEN1-216ENST00000556066 SMARCA4P51532 1647 aa12.94□□□□□ -0.34
PSEN1-216ENST00000556066 CUX2O14529 1486 aa12.91□□□□□ -0.34
PSEN1-216ENST00000556066 NCAPD3P42695 1498 aa12.91□□□□□ -0.34
PSEN1-216ENST00000556066 ATAD2BQ9ULI0 1458 aa12.91□□□□□ -0.34
PSEN1-216ENST00000556066 SMARCA2P51531 1590 aa12.89□□□□□ -0.35
PSEN1-216ENST00000556066 BAZ1AQ9NRL2 1556 aaPredicted RBP12.86□□□□□ -0.35
PSEN1-216ENST00000556066 HMGXB3Q12766 1538 aa12.84□□□□□ -0.35
PSEN1-216ENST00000556066 ERCC6Q03468 1493 aa12.84□□□□□ -0.35
PSEN1-216ENST00000556066 BAZ1BQ9UIG0 1483 aaKnown RBP12.81□□□□□ -0.36
PSEN1-216ENST00000556066 MROH2BQ7Z745 1585 aa12.78□□□□□ -0.36
PSEN1-216ENST00000556066 PEG3Q9GZU2 1588 aa12.77□□□□□ -0.37
PSEN1-216ENST00000556066 NESP48681 1621 aa12.74□□□□□ -0.37
PSEN1-216ENST00000556066 NCBP3Q53F19 620 aaKnown RBP12.7□□□□□ -0.38
PSEN1-216ENST00000556066 WIZO95785 1651 aa12.67□□□□□ -0.38
PSEN1-216ENST00000556066 LAMC3Q9Y6N6 1575 aa12.64□□□□□ -0.39
PSEN1-216ENST00000556066 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.64□□□□□ -0.392e-7■□□□□ 10.6
PSEN1-216ENST00000556066 KCNA4P22459 653 aa12.63□□□□□ -0.39
PSEN1-216ENST00000556066 KIF21AQ7Z4S6 1674 aa12.61□□□□□ -0.39
PSEN1-216ENST00000556066 THOC2Q8NI27 1593 aaKnown RBP12.6□□□□□ -0.39
PSEN1-216ENST00000556066 TRIM41Q8WV44 630 aa12.58□□□□□ -0.4
PSEN1-216ENST00000556066 PDS5BQ9NTI5 1447 aa12.56□□□□□ -0.4
PSEN1-216ENST00000556066 CADPSQ9ULU8 1353 aa12.54□□□□□ -0.4
PSEN1-216ENST00000556066 RSF1Q96T23 1441 aaPredicted RBP12.53□□□□□ -0.4
PSEN1-216ENST00000556066 TOP2AP11388 1531 aaKnown RBP12.47□□□□□ -0.41
PSEN1-216ENST00000556066 MRC2Q9UBG0 1479 aa12.46□□□□□ -0.42
PSEN1-216ENST00000556066 CEP164Q9UPV0 1460 aa12.44□□□□□ -0.42
PSEN1-216ENST00000556066 FANCD2Q9BXW9 1451 aa12.42□□□□□ -0.42
PSEN1-216ENST00000556066 WDR62O43379 1518 aa12.42□□□□□ -0.42
PSEN1-216ENST00000556066 CFTRP13569 1480 aa12.4□□□□□ -0.42
PSEN1-216ENST00000556066 PRDM2Q13029 1718 aa12.37□□□□□ -0.43
PSEN1-216ENST00000556066 OSCARQ8IYS5 282 aa12.34□□□□□ -0.43
PSEN1-216ENST00000556066 CCDC88BA6NC98 1476 aa12.34□□□□□ -0.43
PSEN1-216ENST00000556066 NPM3O75607 178 aaKnown RBP12.31□□□□□ -0.44
PSEN1-216ENST00000556066 URB2Q14146 1524 aaKnown RBP12.31□□□□□ -0.44
PSEN1-216ENST00000556066 CAPN15O75808 1086 aa12.25□□□□□ -0.45
PSEN1-216ENST00000556066 POTEHQ6S545 545 aa12.22□□□□□ -0.45
PSEN1-216ENST00000556066 TOPBP1Q92547 1522 aa12.19□□□□□ -0.46
PSEN1-216ENST00000556066 U3KPZ7 1027 aaPredicted RBP12.18□□□□□ -0.46
PSEN1-216ENST00000556066 IFT140Q96RY7 1462 aa12.16□□□□□ -0.46
PSEN1-216ENST00000556066 ABCC8Q09428 1581 aa12.16□□□□□ -0.46
PSEN1-216ENST00000556066 ZNF608Q9ULD9 1512 aaPredicted RBP12.16□□□□□ -0.46
PSEN1-216ENST00000556066 DNMBPQ6XZF7 1577 aa12.15□□□□□ -0.46
PSEN1-216ENST00000556066 RIMBP3CA6NJZ7 1639 aa12.15□□□□□ -0.47
PSEN1-216ENST00000556066 RIMBP3BA6NNM3 1639 aa12.15□□□□□ -0.47
PSEN1-216ENST00000556066 RIMBP3Q9UFD9 1639 aa12.15□□□□□ -0.47
PSEN1-216ENST00000556066 DSG3P32926 999 aa12.14□□□□□ -0.47
PSEN1-216ENST00000556066 APLP2Q06481 763 aa12.11□□□□□ -0.47
PSEN1-216ENST00000556066 EIF4G3O43432 1585 aaKnown RBP12.1□□□□□ -0.47
PSEN1-216ENST00000556066 SUPT5HO00267 1087 aaKnown RBP12.1□□□□□ -0.47
PSEN1-216ENST00000556066 SPINK5Q9NQ38 1064 aaPredicted RBP12.1□□□□□ -0.47
PSEN1-216ENST00000556066 ARHGEF11O15085 1522 aa12.1□□□□□ -0.47
PSEN1-216ENST00000556066 TARBP1Q13395 1621 aaKnown RBP12.08□□□□□ -0.48
PSEN1-216ENST00000556066 CYB5RLQ6IPT4 315 aa12.08□□□□□ -0.48
PSEN1-216ENST00000556066 POLA1P09884 1462 aaPredicted RBP12.07□□□□□ -0.48
PSEN1-216ENST00000556066 SLC4A1APQ9BWU0 796 aaKnown RBP12.06□□□□□ -0.48
PSEN1-216ENST00000556066 AQRO60306 1485 aaKnown RBP eCLIP12.06□□□□□ -0.48
PSEN1-216ENST00000556066 RAD54L2Q9Y4B4 1467 aa12.04□□□□□ -0.48
PSEN1-216ENST00000556066 CHD1O14646 1710 aa12.04□□□□□ -0.48
PSEN1-216ENST00000556066 SOGA1O94964 1423 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 144.5 ms