RNA–Protein interactions for RNA: ENST00000555628.5

PRKCH-218, Transcript of protein kinase C eta, humanhuman

TSL 4

Gene PRKCH, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-218ENST00000555628 AEBP2Q6ZN18 517 aaPredicted RBP27.83■■■□□ 2.05
PRKCH-218ENST00000555628 CHIC1Q5VXU3 224 aa26.8■■□□□ 1.88
PRKCH-218ENST00000555628 NISCHQ9Y2I1 1504 aa23.79■■□□□ 1.4
PRKCH-218ENST00000555628 PHF23Q9BUL5 403 aaPredicted RBP23.65■■□□□ 1.38
PRKCH-218ENST00000555628 SENP3Q9H4L4 574 aaPredicted RBP23.49■■□□□ 1.35
PRKCH-218ENST00000555628 FOXD1Q16676 465 aa21.97■■□□□ 1.11
PRKCH-218ENST00000555628 ABCC9O60706 1549 aa21.82■■□□□ 1.08
PRKCH-218ENST00000555628 PLPPR3Q6T4P5 718 aa21.57■■□□□ 1.04
PRKCH-218ENST00000555628 CCDC180Q9P1Z9 1646 aa21.56■■□□□ 1.04
PRKCH-218ENST00000555628 PPP6R1Q9UPN7 881 aa21■□□□□ 0.95
PRKCH-218ENST00000555628 ADRA2BP18089 450 aa20.92■□□□□ 0.94
PRKCH-218ENST00000555628 DNAJC5BQ9UF47 199 aa20.88■□□□□ 0.93
PRKCH-218ENST00000555628 RB1CC1Q8TDY2 1594 aa20.63■□□□□ 0.89
PRKCH-218ENST00000555628 PIAS4Q8N2W9 510 aaPredicted RBP20.57■□□□□ 0.88
PRKCH-218ENST00000555628 NACADO15069 1562 aa20.42■□□□□ 0.86
PRKCH-218ENST00000555628 UNC13AQ9UPW8 1703 aa20.27■□□□□ 0.83
PRKCH-218ENST00000555628 MSH5O43196 834 aa20.21■□□□□ 0.83
PRKCH-218ENST00000555628 PABPN1Q86U42 306 aaKnown RBP eCLIP20.18■□□□□ 0.82
PRKCH-218ENST00000555628 BICRAQ9NZM4 1560 aa20.17■□□□□ 0.82
PRKCH-218ENST00000555628 MYO15BQ96JP2 1530 aa20.1■□□□□ 0.81
PRKCH-218ENST00000555628 DCAF8L2P0C7V8 631 aa19.91■□□□□ 0.78
PRKCH-218ENST00000555628 SHROOM4Q9ULL8 1493 aa19.83■□□□□ 0.76
PRKCH-218ENST00000555628 CC2D2AQ9P2K1 1620 aa19.76■□□□□ 0.75
PRKCH-218ENST00000555628 CECR2Q9BXF3 1484 aa19.72■□□□□ 0.75
PRKCH-218ENST00000555628 DCAF1Q9Y4B6 1507 aa19.69■□□□□ 0.74
PRKCH-218ENST00000555628 ZCCHC6Q5VYS8 1495 aaKnown RBP19.67■□□□□ 0.74
PRKCH-218ENST00000555628 EIF4G1Q04637 1599 aaKnown RBP19.63■□□□□ 0.73
PRKCH-218ENST00000555628 SCRIBQ14160 1630 aa19.53■□□□□ 0.72
PRKCH-218ENST00000555628 DNAJC5Q9H3Z4 198 aa19.41■□□□□ 0.7
PRKCH-218ENST00000555628 MAPK8IP2Q13387 824 aaPredicted RBP19.13■□□□□ 0.65
PRKCH-218ENST00000555628 PPP4R3CPQ6ZMV5 832 aa19.05■□□□□ 0.64
PRKCH-218ENST00000555628 POTEDQ86YR6 584 aa19.04■□□□□ 0.64
PRKCH-218ENST00000555628 CUX2O14529 1486 aa19.03■□□□□ 0.64
PRKCH-218ENST00000555628 SCAF1Q9H7N4 1312 aaKnown RBP18.96■□□□□ 0.63
PRKCH-218ENST00000555628 NCAPD3P42695 1498 aa18.88■□□□□ 0.61
PRKCH-218ENST00000555628 ERCC6Q03468 1493 aa18.8■□□□□ 0.6
PRKCH-218ENST00000555628 ATAD2BQ9ULI0 1458 aa18.76■□□□□ 0.59
PRKCH-218ENST00000555628 DMRT2Q9Y5R5 561 aa18.74■□□□□ 0.59
PRKCH-218ENST00000555628 HMGXB3Q12766 1538 aa18.73■□□□□ 0.59
PRKCH-218ENST00000555628 NESP48681 1621 aa18.68■□□□□ 0.58
PRKCH-218ENST00000555628 THOC2Q8NI27 1593 aaKnown RBP18.66■□□□□ 0.58
PRKCH-218ENST00000555628 SMARCA2P51531 1590 aa18.65■□□□□ 0.58
PRKCH-218ENST00000555628 SMARCA4P51532 1647 aa18.65■□□□□ 0.58
PRKCH-218ENST00000555628 PEG3Q9GZU2 1588 aa18.55■□□□□ 0.56
PRKCH-218ENST00000555628 CNKSR2Q8WXI2 1034 aa18.52■□□□□ 0.56
PRKCH-218ENST00000555628 LAMC3Q9Y6N6 1575 aa18.5■□□□□ 0.55
PRKCH-218ENST00000555628 BAZ1BQ9UIG0 1483 aaKnown RBP18.49■□□□□ 0.55
PRKCH-218ENST00000555628 BAZ1AQ9NRL2 1556 aaPredicted RBP18.46■□□□□ 0.55
PRKCH-218ENST00000555628 KIF21AQ7Z4S6 1674 aa18.45■□□□□ 0.54
PRKCH-218ENST00000555628 NCBP3Q53F19 620 aaKnown RBP18.35■□□□□ 0.53
PRKCH-218ENST00000555628 KCNA4P22459 653 aa18.33■□□□□ 0.52
PRKCH-218ENST00000555628 MROH2BQ7Z745 1585 aa18.33■□□□□ 0.52
PRKCH-218ENST00000555628 PDS5BQ9NTI5 1447 aa18.32■□□□□ 0.52
PRKCH-218ENST00000555628 WDR62O43379 1518 aa18.28■□□□□ 0.52
PRKCH-218ENST00000555628 HOXD11P31277 338 aaPredicted RBP18.26■□□□□ 0.51
PRKCH-218ENST00000555628 MRC2Q9UBG0 1479 aa18.25■□□□□ 0.51
PRKCH-218ENST00000555628 TRIM41Q8WV44 630 aa18.24■□□□□ 0.51
PRKCH-218ENST00000555628 RNF216Q9NWF9 866 aaPredicted RBP18.23■□□□□ 0.51
PRKCH-218ENST00000555628 CADPSQ9ULU8 1353 aa18.22■□□□□ 0.51
PRKCH-218ENST00000555628 NPM3O75607 178 aaKnown RBP18.2■□□□□ 0.5
PRKCH-218ENST00000555628 CEP164Q9UPV0 1460 aa18.07■□□□□ 0.48
PRKCH-218ENST00000555628 WIZO95785 1651 aa18.06■□□□□ 0.48
PRKCH-218ENST00000555628 FANCD2Q9BXW9 1451 aa18.02■□□□□ 0.48
PRKCH-218ENST00000555628 CFTRP13569 1480 aa18■□□□□ 0.47
PRKCH-218ENST00000555628 DCAF8L1A6NGE4 600 aa17.98■□□□□ 0.47
PRKCH-218ENST00000555628 URB2Q14146 1524 aaKnown RBP17.97■□□□□ 0.47
PRKCH-218ENST00000555628 OSCARQ8IYS5 282 aa17.94■□□□□ 0.46
PRKCH-218ENST00000555628 RIMBP3CA6NJZ7 1639 aa17.9■□□□□ 0.46
PRKCH-218ENST00000555628 RIMBP3BA6NNM3 1639 aa17.9■□□□□ 0.46
PRKCH-218ENST00000555628 RIMBP3Q9UFD9 1639 aa17.9■□□□□ 0.46
PRKCH-218ENST00000555628 TOP2AP11388 1531 aaKnown RBP17.82■□□□□ 0.44
PRKCH-218ENST00000555628 ARHGEF11O15085 1522 aa17.81■□□□□ 0.44
PRKCH-218ENST00000555628 PRDM2Q13029 1718 aa17.8■□□□□ 0.44
PRKCH-218ENST00000555628 ZNF608Q9ULD9 1512 aaPredicted RBP17.78■□□□□ 0.44
PRKCH-218ENST00000555628 RSF1Q96T23 1441 aaPredicted RBP17.78■□□□□ 0.44
PRKCH-218ENST00000555628 IFT140Q96RY7 1462 aa17.74■□□□□ 0.43
PRKCH-218ENST00000555628 EIF4G3O43432 1585 aaKnown RBP17.68■□□□□ 0.42
PRKCH-218ENST00000555628 TOPBP1Q92547 1522 aa17.67■□□□□ 0.42
PRKCH-218ENST00000555628 ARAP1Q96P48 1450 aa17.63■□□□□ 0.41
PRKCH-218ENST00000555628 TARBP1Q13395 1621 aaKnown RBP17.61■□□□□ 0.41
PRKCH-218ENST00000555628 CHD1O14646 1710 aa17.61■□□□□ 0.41
PRKCH-218ENST00000555628 CCDC88BA6NC98 1476 aa17.59■□□□□ 0.41
PRKCH-218ENST00000555628 DNMBPQ6XZF7 1577 aa17.57■□□□□ 0.4
PRKCH-218ENST00000555628 ABCC8Q09428 1581 aa17.54■□□□□ 0.4
PRKCH-218ENST00000555628 CYB5RLQ6IPT4 315 aa17.53■□□□□ 0.4
PRKCH-218ENST00000555628 AQRO60306 1485 aaKnown RBP eCLIP17.51■□□□□ 0.39
PRKCH-218ENST00000555628 POLA1P09884 1462 aaPredicted RBP17.47■□□□□ 0.39
PRKCH-218ENST00000555628 CLASP1Q7Z460 1538 aa17.47■□□□□ 0.39
PRKCH-218ENST00000555628 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.39■□□□□ 0.37
PRKCH-218ENST00000555628 RNF39Q9H2S5 420 aa17.38■□□□□ 0.37
PRKCH-218ENST00000555628 RAD54L2Q9Y4B4 1467 aa17.37■□□□□ 0.37
PRKCH-218ENST00000555628 WDR97A6NE52 1622 aa17.37■□□□□ 0.37
PRKCH-218ENST00000555628 TRHP20396 242 aaPredicted RBP17.37■□□□□ 0.37
PRKCH-218ENST00000555628 SNAPC4Q5SXM2 1469 aa17.35■□□□□ 0.37
PRKCH-218ENST00000555628 SLC4A1APQ9BWU0 796 aaKnown RBP17.33■□□□□ 0.36
PRKCH-218ENST00000555628 TDRD9Q8NDG6 1382 aaKnown RBP17.31■□□□□ 0.36
PRKCH-218ENST00000555628 SLC4A2P04920 1241 aa17.31■□□□□ 0.36
PRKCH-218ENST00000555628 MAGI1Q96QZ7 1491 aaPredicted RBP17.31■□□□□ 0.36
PRKCH-218ENST00000555628 SYNJ1O43426 1573 aa17.3■□□□□ 0.36
PRKCH-218ENST00000555628 FBLN2P98095 1184 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms