RNA–Protein interactions for RNA: ENST00000552352.1

RPH3A-223, Transcript of rabphilin 3A, human

TSL 3

Gene RPH3A, Length 2,535 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RPH3A-223	ENST00000552352	NISCH	Q9Y2I1	1504 aa		16.87	■□□□□ 0.29
RPH3A-223	ENST00000552352	AEBP2	Q6ZN18	517 aa	Predicted RBP	15.82	■□□□□ 0.12
RPH3A-223	ENST00000552352	CHIC1	Q5VXU3	224 aa		15.67	■□□□□ 0.1
RPH3A-223	ENST00000552352	CCDC180	Q9P1Z9	1646 aa		14.67	□□□□□ -0.06
RPH3A-223	ENST00000552352	ZCCHC6	Q5VYS8	1495 aa	Known RBP	14.26	□□□□□ -0.13
RPH3A-223	ENST00000552352	DCAF1	Q9Y4B6	1507 aa		14.07	□□□□□ -0.16
RPH3A-223	ENST00000552352	PHF23	Q9BUL5	403 aa	Predicted RBP	13.87	□□□□□ -0.19
RPH3A-223	ENST00000552352	MYO15B	Q96JP2	1530 aa		13.82	□□□□□ -0.2
RPH3A-223	ENST00000552352	SHROOM4	Q9ULL8	1493 aa		13.72	□□□□□ -0.21
RPH3A-223	ENST00000552352	NACAD	O15069	1562 aa		13.57	□□□□□ -0.24
RPH3A-223	ENST00000552352	DCAF8L2	P0C7V8	631 aa		13.56	□□□□□ -0.24
RPH3A-223	ENST00000552352	HRC	P23327	699 aa		13.43	□□□□□ -0.26
RPH3A-223	ENST00000552352	ABCC9	O60706	1549 aa		13.43	□□□□□ -0.26
RPH3A-223	ENST00000552352	SUPT5H	O00267	1087 aa	Known RBP	13.39	□□□□□ -0.27
RPH3A-223	ENST00000552352	SCRIB	Q14160	1630 aa		13.37	□□□□□ -0.27
RPH3A-223	ENST00000552352	RB1CC1	Q8TDY2	1594 aa		13.35	□□□□□ -0.27
RPH3A-223	ENST00000552352	SENP3	Q9H4L4	574 aa	Predicted RBP	13.29	□□□□□ -0.28
RPH3A-223	ENST00000552352	RSF1	Q96T23	1441 aa	Predicted RBP	13.16	□□□□□ -0.3
RPH3A-223	ENST00000552352	PCGF6	Q9BYE7	350 aa		13.14	□□□□□ -0.31
RPH3A-223	ENST00000552352	UNC13A	Q9UPW8	1703 aa		13.06	□□□□□ -0.32
RPH3A-223	ENST00000552352	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.04	□□□□□ -0.32
RPH3A-223	ENST00000552352	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.02	□□□□□ -0.33
RPH3A-223	ENST00000552352	CECR2	Q9BXF3	1484 aa		13.01	□□□□□ -0.33
RPH3A-223	ENST00000552352	MROH2B	Q7Z745	1585 aa		13	□□□□□ -0.33
RPH3A-223	ENST00000552352	BICRA	Q9NZM4	1560 aa		12.94	□□□□□ -0.34
RPH3A-223	ENST00000552352	SMARCA4	P51532	1647 aa		12.91	□□□□□ -0.34
RPH3A-223	ENST00000552352	WIZ	O95785	1651 aa		12.88	□□□□□ -0.35
RPH3A-223	ENST00000552352	TRIM26	Q12899	539 aa	Predicted RBP	12.85	□□□□□ -0.35
RPH3A-223	ENST00000552352	PLPPR3	Q6T4P5	718 aa		12.85	□□□□□ -0.35
RPH3A-223	ENST00000552352	TOP2A	P11388	1531 aa	Known RBP	12.84	□□□□□ -0.35
RPH3A-223	ENST00000552352	PEG3	Q9GZU2	1588 aa		12.82	□□□□□ -0.36
RPH3A-223	ENST00000552352	LOC105371045	A0A1W2PR82	267 aa		12.81	□□□□□ -0.36
RPH3A-223	ENST00000552352	PELP1	Q8IZL8	1130 aa	Known RBP	12.81	□□□□□ -0.36
RPH3A-223	ENST00000552352	EIF4G1	Q04637	1599 aa	Known RBP	12.77	□□□□□ -0.37
RPH3A-223	ENST00000552352	ZEB1	P37275	1124 aa	Predicted RBP	12.75	□□□□□ -0.37
RPH3A-223	ENST00000552352	SMARCA2	P51531	1590 aa		12.7	□□□□□ -0.38
RPH3A-223	ENST00000552352	CCDC88B	A6NC98	1476 aa		12.65	□□□□□ -0.38
RPH3A-223	ENST00000552352	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.65	□□□□□ -0.38
RPH3A-223	ENST00000552352	ATAD2B	Q9ULI0	1458 aa		12.62	□□□□□ -0.39
RPH3A-223	ENST00000552352	TRIM41	Q8WV44	630 aa		12.58	□□□□□ -0.4
RPH3A-223	ENST00000552352	SCAF1	Q9H7N4	1312 aa	Known RBP	12.58	□□□□□ -0.4
RPH3A-223	ENST00000552352	HMGXB3	Q12766	1538 aa		12.54	□□□□□ -0.4
RPH3A-223	ENST00000552352	BAZ1B	Q9UIG0	1483 aa	Known RBP	12.54	□□□□□ -0.4
RPH3A-223	ENST00000552352	NCAPD3	P42695	1498 aa		12.51	□□□□□ -0.41
RPH3A-223	ENST00000552352	EEA1	Q15075	1411 aa		12.42	□□□□□ -0.42
RPH3A-223	ENST00000552352	ABCC8	Q09428	1581 aa		12.42	□□□□□ -0.42
RPH3A-223	ENST00000552352	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.37	□□□□□ -0.43
RPH3A-223	ENST00000552352	FOXD1	Q16676	465 aa		12.36	□□□□□ -0.43
RPH3A-223	ENST00000552352	ACIN1	Q9UKV3	1341 aa	Known RBP	12.35	□□□□□ -0.43
RPH3A-223	ENST00000552352	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.35	□□□□□ -0.43
RPH3A-223	ENST00000552352	SYNJ1	O43426	1573 aa		12.3	□□□□□ -0.44
RPH3A-223	ENST00000552352	MYT1	Q01538	1121 aa		12.3	□□□□□ -0.44
RPH3A-223	ENST00000552352	TOP2B	Q02880	1626 aa		12.29	□□□□□ -0.44
RPH3A-223	ENST00000552352	BIVM-ERCC5	R4GMW8	1640 aa		12.29	□□□□□ -0.44
RPH3A-223	ENST00000552352	CFTR	P13569	1480 aa		12.29	□□□□□ -0.44
RPH3A-223	ENST00000552352	NEUROD1	Q13562	356 aa		12.29	□□□□□ -0.44
RPH3A-223	ENST00000552352	PRDM2	Q13029	1718 aa		12.28	□□□□□ -0.44
RPH3A-223	ENST00000552352	SOGA1	O94964	1423 aa		12.24	□□□□□ -0.45
RPH3A-223	ENST00000552352	CENPB	P07199	599 aa	Predicted RBP	12.24	□□□□□ -0.45
RPH3A-223	ENST00000552352	CCER1	Q8TC90	406 aa	Predicted RBP	12.24	□□□□□ -0.45
RPH3A-223	ENST00000552352	KIF21B	O75037	1637 aa		12.23	□□□□□ -0.45
RPH3A-223	ENST00000552352	CC2D2A	Q9P2K1	1620 aa		12.23	□□□□□ -0.45
RPH3A-223	ENST00000552352	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.22	□□□□□ -0.45
RPH3A-223	ENST00000552352	TNIK	Q9UKE5	1360 aa		12.22	□□□□□ -0.45
RPH3A-223	ENST00000552352	EHMT2	Q96KQ7	1210 aa		12.21	□□□□□ -0.45
RPH3A-223	ENST00000552352	DIEXF	Q68CQ4	756 aa	Known RBP	12.2	□□□□□ -0.46
RPH3A-223	ENST00000552352	GTF3C3	Q9Y5Q9	886 aa		12.2	□□□□□ -0.46
RPH3A-223	ENST00000552352	GOLGA3	Q08378	1498 aa		12.2	□□□□□ -0.46
RPH3A-223	ENST00000552352	CSRNP3	Q8WYN3	585 aa		12.19	□□□□□ -0.46
RPH3A-223	ENST00000552352	CEP164	Q9UPV0	1460 aa		12.18	□□□□□ -0.46
RPH3A-223	ENST00000552352	ADRA2B	P18089	450 aa		12.17	□□□□□ -0.46
RPH3A-223	ENST00000552352	PPP6R1	Q9UPN7	881 aa		12.17	□□□□□ -0.46
RPH3A-223	ENST00000552352	RUSC2	Q8N2Y8	1516 aa		12.17	□□□□□ -0.46
RPH3A-223	ENST00000552352	CADPS	Q9ULU8	1353 aa		12.16	□□□□□ -0.46
RPH3A-223	ENST00000552352	CUX1	P39880	1505 aa		12.15	□□□□□ -0.46
RPH3A-223	ENST00000552352	CEP162	Q5TB80	1403 aa		12.12	□□□□□ -0.47
RPH3A-223	ENST00000552352	ERICH3	Q5RHP9	1530 aa		12.11	□□□□□ -0.47
RPH3A-223	ENST00000552352	PRX	Q9BXM0	1461 aa		12.07	□□□□□ -0.48
RPH3A-223	ENST00000552352	KIF27	Q86VH2	1401 aa		12.04	□□□□□ -0.48
RPH3A-223	ENST00000552352	LAMC3	Q9Y6N6	1575 aa		12.03	□□□□□ -0.48
RPH3A-223	ENST00000552352	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.03	□□□□□ -0.48
RPH3A-223	ENST00000552352	FANCD2	Q9BXW9	1451 aa		12.01	□□□□□ -0.49
RPH3A-223	ENST00000552352	RAPGEF2	Q9Y4G8	1499 aa		12.01	□□□□□ -0.49
RPH3A-223	ENST00000552352	DNMBP	Q6XZF7	1577 aa		12	□□□□□ -0.49
RPH3A-223	ENST00000552352	UBTF	P17480	764 aa	Known RBP	11.98	□□□□□ -0.49
RPH3A-223	ENST00000552352	CLIP1	P30622	1438 aa		11.97	□□□□□ -0.49
RPH3A-223	ENST00000552352	FGD5	Q6ZNL6	1462 aa		11.96	□□□□□ -0.49
RPH3A-223	ENST00000552352	SLC24A1	O60721	1099 aa		11.94	□□□□□ -0.5
RPH3A-223	ENST00000552352	VPS8	Q8N3P4	1428 aa		11.94	□□□□□ -0.5
RPH3A-223	ENST00000552352	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.93	□□□□□ -0.5
RPH3A-223	ENST00000552352	ABCA10	Q8WWZ4	1543 aa		11.92	□□□□□ -0.5
RPH3A-223	ENST00000552352	TOPBP1	Q92547	1522 aa		11.92	□□□□□ -0.5
RPH3A-223	ENST00000552352	CUX2	O14529	1486 aa		11.91	□□□□□ -0.5
RPH3A-223	ENST00000552352	YTHDC1	Q96MU7	727 aa	Known RBP	11.91	□□□□□ -0.5
RPH3A-223	ENST00000552352	IGF1R	P08069	1367 aa		11.89	□□□□□ -0.51
RPH3A-223	ENST00000552352	PDS5B	Q9NTI5	1447 aa		11.89	□□□□□ -0.51
RPH3A-223	ENST00000552352	NES	P48681	1621 aa		11.88	□□□□□ -0.51
RPH3A-223	ENST00000552352	MIER1	Q8N108	512 aa		11.88	□□□□□ -0.51
RPH3A-223	ENST00000552352	WDR97	A6NE52	1622 aa		11.88	□□□□□ -0.51
RPH3A-223	ENST00000552352	POLA1	P09884	1462 aa	Predicted RBP	11.88	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms