RNA–Protein interactions for RNA: ENST00000546274.6

UBR1-202, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 2 BASIC

Gene UBR1, Length 3,332 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-202ENST00000546274 NISCHQ9Y2I1 1504 aa15.83■□□□□ 0.12
UBR1-202ENST00000546274 CCDC180Q9P1Z9 1646 aa13.89□□□□□ -0.19
UBR1-202ENST00000546274 PELP1Q8IZL8 1130 aaKnown RBP13.53□□□□□ -0.24
UBR1-202ENST00000546274 SHROOM4Q9ULL8 1493 aa13.45□□□□□ -0.26
UBR1-202ENST00000546274 ZCCHC6Q5VYS8 1495 aaKnown RBP13.43□□□□□ -0.26
UBR1-202ENST00000546274 ABCC9O60706 1549 aa13.36□□□□□ -0.27
UBR1-202ENST00000546274 HRCP23327 699 aa13.22□□□□□ -0.29
UBR1-202ENST00000546274 SUPT5HO00267 1087 aaKnown RBP13.19□□□□□ -0.3
UBR1-202ENST00000546274 MYT1Q01538 1121 aa13.13□□□□□ -0.31
UBR1-202ENST00000546274 PPARGC1BQ86YN6 1023 aaKnown RBP13.1□□□□□ -0.31
UBR1-202ENST00000546274 DCAF1Q9Y4B6 1507 aa13.02□□□□□ -0.33
UBR1-202ENST00000546274 MYO15BQ96JP2 1530 aa13.01□□□□□ -0.33
UBR1-202ENST00000546274 NACADO15069 1562 aa13.01□□□□□ -0.33
UBR1-202ENST00000546274 RB1CC1Q8TDY2 1594 aa13.01□□□□□ -0.33
UBR1-202ENST00000546274 CHIC1Q5VXU3 224 aa12.93□□□□□ -0.34
UBR1-202ENST00000546274 DCAF8L2P0C7V8 631 aa12.89□□□□□ -0.35
UBR1-202ENST00000546274 SCAF1Q9H7N4 1312 aaKnown RBP12.89□□□□□ -0.35
UBR1-202ENST00000546274 PCGF6Q9BYE7 350 aa12.83□□□□□ -0.36
UBR1-202ENST00000546274 UNC13AQ9UPW8 1703 aa12.67□□□□□ -0.38
UBR1-202ENST00000546274 AEBP2Q6ZN18 517 aaPredicted RBP12.61□□□□□ -0.39
UBR1-202ENST00000546274 SCRIBQ14160 1630 aa12.6□□□□□ -0.39
UBR1-202ENST00000546274 RSF1Q96T23 1441 aaPredicted RBP12.54□□□□□ -0.4
UBR1-202ENST00000546274 LOC105371045A0A1W2PR82 267 aa12.54□□□□□ -0.4
UBR1-202ENST00000546274 BICRAQ9NZM4 1560 aa12.53□□□□□ -0.4
UBR1-202ENST00000546274 TTBK1Q5TCY1 1321 aaPredicted RBP12.42□□□□□ -0.42
UBR1-202ENST00000546274 PABPN1Q86U42 306 aaKnown RBP eCLIP12.41□□□□□ -0.42
UBR1-202ENST00000546274 BCL11AQ9H165 835 aa12.39□□□□□ -0.43
UBR1-202ENST00000546274 GTF3C3Q9Y5Q9 886 aa12.37□□□□□ -0.43
UBR1-202ENST00000546274 ACIN1Q9UKV3 1341 aaKnown RBP12.35□□□□□ -0.43
UBR1-202ENST00000546274 NEUROD1Q13562 356 aa12.35□□□□□ -0.43
UBR1-202ENST00000546274 CECR2Q9BXF3 1484 aa12.33□□□□□ -0.44
UBR1-202ENST00000546274 PRKCSHP14314 528 aaPredicted RBP12.33□□□□□ -0.44
UBR1-202ENST00000546274 TRIM26Q12899 539 aaPredicted RBP12.33□□□□□ -0.44
UBR1-202ENST00000546274 MROH2BQ7Z745 1585 aa12.32□□□□□ -0.44
UBR1-202ENST00000546274 WIZO95785 1651 aa12.29□□□□□ -0.44
UBR1-202ENST00000546274 FAM9AQ8IZU1 332 aaPredicted RBP12.29□□□□□ -0.44
UBR1-202ENST00000546274 TRIM41Q8WV44 630 aa12.28□□□□□ -0.44
UBR1-202ENST00000546274 EIF4G1Q04637 1599 aaKnown RBP12.23□□□□□ -0.45
UBR1-202ENST00000546274 CENPBP07199 599 aaPredicted RBP12.23□□□□□ -0.45
UBR1-202ENST00000546274 BAZ1AQ9NRL2 1556 aaPredicted RBP12.22□□□□□ -0.45
UBR1-202ENST00000546274 ZEB1P37275 1124 aaPredicted RBP12.16□□□□□ -0.46
UBR1-202ENST00000546274 CC2D2AQ9P2K1 1620 aa12.15□□□□□ -0.46
UBR1-202ENST00000546274 DNAJC5BQ9UF47 199 aa12.14□□□□□ -0.47
UBR1-202ENST00000546274 TOP2AP11388 1531 aaKnown RBP12.07□□□□□ -0.48
UBR1-202ENST00000546274 SMARCA4P51532 1647 aa12.07□□□□□ -0.48
UBR1-202ENST00000546274 EHMT2Q96KQ7 1210 aa12.05□□□□□ -0.48
UBR1-202ENST00000546274 SMARCA2P51531 1590 aa12.03□□□□□ -0.48
UBR1-202ENST00000546274 ABCC8Q09428 1581 aa12.02□□□□□ -0.49
UBR1-202ENST00000546274 CCDC88BA6NC98 1476 aa12□□□□□ -0.49
UBR1-202ENST00000546274 ANP32EQ9BTT0 268 aa11.96□□□□□ -0.49
UBR1-202ENST00000546274 PEG3Q9GZU2 1588 aa11.96□□□□□ -0.49
UBR1-202ENST00000546274 NCAPD3P42695 1498 aa11.95□□□□□ -0.5
UBR1-202ENST00000546274 HMGXB3Q12766 1538 aa11.95□□□□□ -0.5
UBR1-202ENST00000546274 ERICH6Q7L0X2 663 aa11.94□□□□□ -0.5
UBR1-202ENST00000546274 YTHDC1Q96MU7 727 aaKnown RBP11.94□□□□□ -0.5
UBR1-202ENST00000546274 CSRNP3Q8WYN3 585 aa11.93□□□□□ -0.5
UBR1-202ENST00000546274 ATAD2BQ9ULI0 1458 aa11.93□□□□□ -0.5
UBR1-202ENST00000546274 WRNQ14191 1432 aaPredicted RBP eCLIP11.9□□□□□ -0.5
UBR1-202ENST00000546274 DIEXFQ68CQ4 756 aaKnown RBP11.89□□□□□ -0.51
UBR1-202ENST00000546274 SOGA1O94964 1423 aa11.88□□□□□ -0.51
UBR1-202ENST00000546274 CEP162Q5TB80 1403 aa11.86□□□□□ -0.51
UBR1-202ENST00000546274 BAZ1BQ9UIG0 1483 aaKnown RBP11.85□□□□□ -0.51
UBR1-202ENST00000546274 RUSC2Q8N2Y8 1516 aa11.85□□□□□ -0.51
UBR1-202ENST00000546274 TNIKQ9UKE5 1360 aa11.82□□□□□ -0.52
UBR1-202ENST00000546274 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.82□□□□□ -0.52
UBR1-202ENST00000546274 EEA1Q15075 1411 aa11.81□□□□□ -0.52
UBR1-202ENST00000546274 APLP2Q06481 763 aa11.79□□□□□ -0.52
UBR1-202ENST00000546274 SYNJ1O43426 1573 aa11.77□□□□□ -0.52
UBR1-202ENST00000546274 CCER1Q8TC90 406 aaPredicted RBP11.75□□□□□ -0.53
UBR1-202ENST00000546274 GOLGA3Q08378 1498 aa11.74□□□□□ -0.53
UBR1-202ENST00000546274 KIF21BO75037 1637 aa11.73□□□□□ -0.53
UBR1-202ENST00000546274 LAMC3Q9Y6N6 1575 aa11.68□□□□□ -0.54
UBR1-202ENST00000546274 TSHZ2Q9NRE2 1034 aa11.67□□□□□ -0.54
UBR1-202ENST00000546274 CEP164Q9UPV0 1460 aa11.67□□□□□ -0.54
UBR1-202ENST00000546274 UBTFP17480 764 aaKnown RBP11.66□□□□□ -0.54
UBR1-202ENST00000546274 ANO8Q9HCE9 1232 aaPredicted RBP11.63□□□□□ -0.55
UBR1-202ENST00000546274 TOP2BQ02880 1626 aa11.61□□□□□ -0.55
UBR1-202ENST00000546274 BIVM-ERCC5R4GMW8 1640 aa11.6□□□□□ -0.55
UBR1-202ENST00000546274 RAPGEF2Q9Y4G8 1499 aa11.6□□□□□ -0.55
UBR1-202ENST00000546274 CLIP1P30622 1438 aa11.59□□□□□ -0.55
UBR1-202ENST00000546274 VPS8Q8N3P4 1428 aa11.58□□□□□ -0.56
UBR1-202ENST00000546274 ERCC6Q03468 1493 aa11.57□□□□□ -0.56
UBR1-202ENST00000546274 CADPSQ9ULU8 1353 aa11.57□□□□□ -0.56
UBR1-202ENST00000546274 SUPT16HQ9Y5B9 1047 aaKnown RBP11.57□□□□□ -0.56
UBR1-202ENST00000546274 PDS5BQ9NTI5 1447 aa11.57□□□□□ -0.56
UBR1-202ENST00000546274 PRDM2Q13029 1718 aa11.56□□□□□ -0.56
UBR1-202ENST00000546274 NESP48681 1621 aa11.54□□□□□ -0.56
UBR1-202ENST00000546274 MIER1Q8N108 512 aa11.54□□□□□ -0.56
UBR1-202ENST00000546274 CUX2O14529 1486 aa11.53□□□□□ -0.56
UBR1-202ENST00000546274 CFTRP13569 1480 aa11.53□□□□□ -0.56
UBR1-202ENST00000546274 ERICH3Q5RHP9 1530 aa11.51□□□□□ -0.57
UBR1-202ENST00000546274 KIF21AQ7Z4S6 1674 aa11.51□□□□□ -0.57
UBR1-202ENST00000546274 ZNF316A6NFI3 1004 aaPredicted RBP11.5□□□□□ -0.57
UBR1-202ENST00000546274 PRXQ9BXM0 1461 aa11.49□□□□□ -0.57
UBR1-202ENST00000546274 THOC2Q8NI27 1593 aaKnown RBP11.48□□□□□ -0.57
UBR1-202ENST00000546274 HNRNPUL2Q1KMD3 747 aaKnown RBP11.47□□□□□ -0.57
UBR1-202ENST00000546274 ARAP1Q96P48 1450 aa11.47□□□□□ -0.57
UBR1-202ENST00000546274 CUX1P39880 1505 aa11.46□□□□□ -0.57
UBR1-202ENST00000546274 CCDC136Q96JN2 1154 aa11.46□□□□□ -0.58
UBR1-202ENST00000546274 MRC2Q9UBG0 1479 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms