RNA–Protein interactions for RNA: ENST00000546146.5

LDHC-210, Transcript of lactate dehydrogenase C, humanhuman

TSL 5 BASIC

Gene LDHC, Length 701 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHC-210ENST00000546146 AEBP2Q6ZN18 517 aaPredicted RBP27.05■■□□□ 1.92
LDHC-210ENST00000546146 CHIC1Q5VXU3 224 aa25.62■■□□□ 1.69
LDHC-210ENST00000546146 SENP3Q9H4L4 574 aaPredicted RBP23.26■■□□□ 1.31
LDHC-210ENST00000546146 NISCHQ9Y2I1 1504 aa23.14■■□□□ 1.3
LDHC-210ENST00000546146 PHF23Q9BUL5 403 aaPredicted RBP22.9■■□□□ 1.26
LDHC-210ENST00000546146 FOXD1Q16676 465 aa21.6■■□□□ 1.05
LDHC-210ENST00000546146 PLPPR3Q6T4P5 718 aa20.5■□□□□ 0.87
LDHC-210ENST00000546146 MSH5O43196 834 aa20.39■□□□□ 0.85
LDHC-210ENST00000546146 PIAS4Q8N2W9 510 aaPredicted RBP20.28■□□□□ 0.84
LDHC-210ENST00000546146 CCDC180Q9P1Z9 1646 aa20.18■□□□□ 0.82
LDHC-210ENST00000546146 POTEDQ86YR6 584 aa20.06■□□□□ 0.8
LDHC-210ENST00000546146 ADRA2BP18089 450 aa20.05■□□□□ 0.8
LDHC-210ENST00000546146 PPP6R1Q9UPN7 881 aa20.04■□□□□ 0.8
LDHC-210ENST00000546146 ZCCHC6Q5VYS8 1495 aaKnown RBP19.41■□□□□ 0.7
LDHC-210ENST00000546146 DCAF8L2P0C7V8 631 aa19.28■□□□□ 0.68
LDHC-210ENST00000546146 DCAF1Q9Y4B6 1507 aa19.15■□□□□ 0.66
LDHC-210ENST00000546146 ABCC9O60706 1549 aa19.1■□□□□ 0.65
LDHC-210ENST00000546146 MYO15BQ96JP2 1530 aa18.95■□□□□ 0.62
LDHC-210ENST00000546146 SHROOM4Q9ULL8 1493 aa18.89■□□□□ 0.61
LDHC-210ENST00000546146 NACADO15069 1562 aa18.85■□□□□ 0.61
LDHC-210ENST00000546146 RB1CC1Q8TDY2 1594 aa18.69■□□□□ 0.58
LDHC-210ENST00000546146 SCRIBQ14160 1630 aa18.54■□□□□ 0.56
LDHC-210ENST00000546146 SCAF1Q9H7N4 1312 aaKnown RBP18.5■□□□□ 0.55
LDHC-210ENST00000546146 MAPK8IP2Q13387 824 aaPredicted RBP18.43■□□□□ 0.54
LDHC-210ENST00000546146 DMRT2Q9Y5R5 561 aa18.35■□□□□ 0.53
LDHC-210ENST00000546146 SUPT5HO00267 1087 aaKnown RBP18.26■□□□□ 0.51
LDHC-210ENST00000546146 UNC13AQ9UPW8 1703 aa18.15■□□□□ 0.5
LDHC-210ENST00000546146 PABPN1Q86U42 306 aaKnown RBP eCLIP18.05■□□□□ 0.48
LDHC-210ENST00000546146 BICRAQ9NZM4 1560 aa18■□□□□ 0.47
LDHC-210ENST00000546146 RSF1Q96T23 1441 aaPredicted RBP17.95■□□□□ 0.46
LDHC-210ENST00000546146 CECR2Q9BXF3 1484 aa17.94■□□□□ 0.46
LDHC-210ENST00000546146 PPP4R3CPQ6ZMV5 832 aa17.92■□□□□ 0.46
LDHC-210ENST00000546146 BAZ1AQ9NRL2 1556 aaPredicted RBP17.91■□□□□ 0.46
LDHC-210ENST00000546146 DCAF8L1A6NGE4 600 aa17.86■□□□□ 0.45
LDHC-210ENST00000546146 MROH2BQ7Z745 1585 aa17.84■□□□□ 0.45
LDHC-210ENST00000546146 SMARCA4P51532 1647 aa17.76■□□□□ 0.43
LDHC-210ENST00000546146 WIZO95785 1651 aa17.68■□□□□ 0.42
LDHC-210ENST00000546146 CACNB1Q02641 598 aaPredicted RBP17.65■□□□□ 0.42
LDHC-210ENST00000546146 CNKSR2Q8WXI2 1034 aa17.63■□□□□ 0.41
LDHC-210ENST00000546146 HOXD11P31277 338 aaPredicted RBP17.58■□□□□ 0.4
LDHC-210ENST00000546146 SMARCA2P51531 1590 aa17.55■□□□□ 0.4
LDHC-210ENST00000546146 TOP2AP11388 1531 aaKnown RBP17.55■□□□□ 0.4
LDHC-210ENST00000546146 PEG3Q9GZU2 1588 aa17.54■□□□□ 0.4
LDHC-210ENST00000546146 EIF4G1Q04637 1599 aaKnown RBP17.52■□□□□ 0.39
LDHC-210ENST00000546146 ATAD2BQ9ULI0 1458 aa17.5■□□□□ 0.39
LDHC-210ENST00000546146 RNF216Q9NWF9 866 aaPredicted RBP17.48■□□□□ 0.39
LDHC-210ENST00000546146 BAZ1BQ9UIG0 1483 aaKnown RBP17.45■□□□□ 0.38
LDHC-210ENST00000546146 NCAPD3P42695 1498 aa17.38■□□□□ 0.37
LDHC-210ENST00000546146 CCDC88BA6NC98 1476 aa17.37■□□□□ 0.37
LDHC-210ENST00000546146 HMGXB3Q12766 1538 aa17.33■□□□□ 0.37
LDHC-210ENST00000546146 NCBP3Q53F19 620 aaKnown RBP17.31■□□□□ 0.36
LDHC-210ENST00000546146 RNF39Q9H2S5 420 aa17.28■□□□□ 0.36
LDHC-210ENST00000546146 CC2D2AQ9P2K1 1620 aa17.26■□□□□ 0.35
LDHC-210ENST00000546146 TRIM41Q8WV44 630 aa17.22■□□□□ 0.35
LDHC-210ENST00000546146 C1QBPQ07021 282 aaKnown RBP17.1■□□□□ 0.33
LDHC-210ENST00000546146 DNAJC5BQ9UF47 199 aa16.98■□□□□ 0.31
LDHC-210ENST00000546146 CFTRP13569 1480 aa16.98■□□□□ 0.31
LDHC-210ENST00000546146 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.96■□□□□ 0.31
LDHC-210ENST00000546146 CADPSQ9ULU8 1353 aa16.96■□□□□ 0.31
LDHC-210ENST00000546146 ABCC8Q09428 1581 aa16.95■□□□□ 0.3
LDHC-210ENST00000546146 WRNQ14191 1432 aaPredicted RBP eCLIP16.95■□□□□ 0.3
LDHC-210ENST00000546146 NPM3O75607 178 aaKnown RBP16.9■□□□□ 0.3
LDHC-210ENST00000546146 FAM9AQ8IZU1 332 aaPredicted RBP16.84■□□□□ 0.29
LDHC-210ENST00000546146 PRDM2Q13029 1718 aa16.84■□□□□ 0.29
LDHC-210ENST00000546146 LAMC3Q9Y6N6 1575 aa16.8■□□□□ 0.28
LDHC-210ENST00000546146 SYNJ1O43426 1573 aa16.77■□□□□ 0.28
LDHC-210ENST00000546146 EEA1Q15075 1411 aa16.77■□□□□ 0.27
LDHC-210ENST00000546146 FANCD2Q9BXW9 1451 aa16.75■□□□□ 0.27
LDHC-210ENST00000546146 TOP2BQ02880 1626 aa16.75■□□□□ 0.27
LDHC-210ENST00000546146 LOC105371045A0A1W2PR82 267 aa16.75■□□□□ 0.27
LDHC-210ENST00000546146 PDS5BQ9NTI5 1447 aa16.74■□□□□ 0.27
LDHC-210ENST00000546146 BIVM-ERCC5R4GMW8 1640 aa16.72■□□□□ 0.27
LDHC-210ENST00000546146 NESP48681 1621 aa16.71■□□□□ 0.27
LDHC-210ENST00000546146 CUX1P39880 1505 aa16.69■□□□□ 0.26
LDHC-210ENST00000546146 CSRNP3Q8WYN3 585 aa16.68■□□□□ 0.26
LDHC-210ENST00000546146 SOGA1O94964 1423 aa16.67■□□□□ 0.26
LDHC-210ENST00000546146 CEP164Q9UPV0 1460 aa16.67■□□□□ 0.26
LDHC-210ENST00000546146 EHMT2Q96KQ7 1210 aa16.59■□□□□ 0.25
LDHC-210ENST00000546146 DNMBPQ6XZF7 1577 aa16.59■□□□□ 0.25
LDHC-210ENST00000546146 RUSC2Q8N2Y8 1516 aa16.57■□□□□ 0.24
LDHC-210ENST00000546146 KIF27Q86VH2 1401 aa16.56■□□□□ 0.24
LDHC-210ENST00000546146 TOPBP1Q92547 1522 aa16.55■□□□□ 0.24
LDHC-210ENST00000546146 FGD5Q6ZNL6 1462 aa16.54■□□□□ 0.24
LDHC-210ENST00000546146 UBTFP17480 764 aaKnown RBP16.51■□□□□ 0.23
LDHC-210ENST00000546146 KIF21AQ7Z4S6 1674 aa16.5■□□□□ 0.23
LDHC-210ENST00000546146 URB2Q14146 1524 aaKnown RBP16.49■□□□□ 0.23
LDHC-210ENST00000546146 GOLGA3Q08378 1498 aa16.48■□□□□ 0.23
LDHC-210ENST00000546146 CUX2O14529 1486 aa16.48■□□□□ 0.23
LDHC-210ENST00000546146 ERCC6Q03468 1493 aa16.47■□□□□ 0.23
LDHC-210ENST00000546146 MRC2Q9UBG0 1479 aa16.47■□□□□ 0.23
LDHC-210ENST00000546146 KCNA4P22459 653 aa16.45■□□□□ 0.22
LDHC-210ENST00000546146 POLA1P09884 1462 aaPredicted RBP16.45■□□□□ 0.22
LDHC-210ENST00000546146 TNIKQ9UKE5 1360 aa16.44■□□□□ 0.22
LDHC-210ENST00000546146 KIF21BO75037 1637 aa16.44■□□□□ 0.22
LDHC-210ENST00000546146 U3KPZ7 1027 aaPredicted RBP16.42■□□□□ 0.22
LDHC-210ENST00000546146 ABCA10Q8WWZ4 1543 aa16.4■□□□□ 0.22
LDHC-210ENST00000546146 RAD54L2Q9Y4B4 1467 aa16.4■□□□□ 0.22
LDHC-210ENST00000546146 CAPN15O75808 1086 aa16.38■□□□□ 0.21
LDHC-210ENST00000546146 IGF1RP08069 1367 aa16.36■□□□□ 0.21
LDHC-210ENST00000546146 PRXQ9BXM0 1461 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms