RNA–Protein interactions for RNA: ENST00000543997.1

NPIPB5-223, Transcript of nuclear pore complex interacting protein family member B5, human

TSL 4

Gene NPIPB5, Length 573 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB5-223	ENST00000543997	AEBP2	Q6ZN18	517 aa	Predicted RBP	16.96	■□□□□ 0.31
NPIPB5-223	ENST00000543997	CHIC1	Q5VXU3	224 aa		15.94	■□□□□ 0.14
NPIPB5-223	ENST00000543997	SENP3	Q9H4L4	574 aa	Predicted RBP	14.61	□□□□□ -0.07
NPIPB5-223	ENST00000543997	PHF23	Q9BUL5	403 aa	Predicted RBP	14.33	□□□□□ -0.12
NPIPB5-223	ENST00000543997	FOXD1	Q16676	465 aa		13.57	□□□□□ -0.24
NPIPB5-223	ENST00000543997	POTED	Q86YR6	584 aa		13	□□□□□ -0.33
NPIPB5-223	ENST00000543997	MSH5	O43196	834 aa		12.9	□□□□□ -0.34
NPIPB5-223	ENST00000543997	NISCH	Q9Y2I1	1504 aa		12.72	□□□□□ -0.37
NPIPB5-223	ENST00000543997	PIAS4	Q8N2W9	510 aa	Predicted RBP	12.64	□□□□□ -0.39
NPIPB5-223	ENST00000543997	PLPPR3	Q6T4P5	718 aa		12.6	□□□□□ -0.39
NPIPB5-223	ENST00000543997	PPP6R1	Q9UPN7	881 aa		12.45	□□□□□ -0.42
NPIPB5-223	ENST00000543997	ADRA2B	P18089	450 aa		12.39	□□□□□ -0.43
NPIPB5-223	ENST00000543997	ABCC9	O60706	1549 aa		11.98	□□□□□ -0.49
NPIPB5-223	ENST00000543997	DNAJC5B	Q9UF47	199 aa		11.65	□□□□□ -0.54
NPIPB5-223	ENST00000543997	CCDC180	Q9P1Z9	1646 aa		11.6	□□□□□ -0.55
NPIPB5-223	ENST00000543997	DMRT2	Q9Y5R5	561 aa		11.51	□□□□□ -0.57
NPIPB5-223	ENST00000543997	SCAF1	Q9H7N4	1312 aa	Known RBP	11.45	□□□□□ -0.58
NPIPB5-223	ENST00000543997	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.45	□□□□□ -0.58
NPIPB5-223	ENST00000543997	RB1CC1	Q8TDY2	1594 aa		11.24	□□□□□ -0.61
NPIPB5-223	ENST00000543997	CACNB1	Q02641	598 aa	Predicted RBP	11.19	□□□□□ -0.62
NPIPB5-223	ENST00000543997	NACAD	O15069	1562 aa		11.09	□□□□□ -0.63
NPIPB5-223	ENST00000543997	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.07	□□□□□ -0.64
NPIPB5-223	ENST00000543997	DNAJC5	Q9H3Z4	198 aa		11.04	□□□□□ -0.64
NPIPB5-223	ENST00000543997	DCAF8L1	A6NGE4	600 aa		11.01	□□□□□ -0.65
NPIPB5-223	ENST00000543997	HOXD11	P31277	338 aa	Predicted RBP	10.99	□□□□□ -0.65
NPIPB5-223	ENST00000543997	PPP4R3CP	Q6ZMV5	832 aa		10.96	□□□□□ -0.65
NPIPB5-223	ENST00000543997	BICRA	Q9NZM4	1560 aa		10.95	□□□□□ -0.66
NPIPB5-223	ENST00000543997	RNF39	Q9H2S5	420 aa		10.95	□□□□□ -0.66
NPIPB5-223	ENST00000543997	UNC13A	Q9UPW8	1703 aa		10.92	□□□□□ -0.66
NPIPB5-223	ENST00000543997	CECR2	Q9BXF3	1484 aa		10.87	□□□□□ -0.67
NPIPB5-223	ENST00000543997	CNKSR2	Q8WXI2	1034 aa		10.86	□□□□□ -0.67
NPIPB5-223	ENST00000543997	MYO15B	Q96JP2	1530 aa		10.85	□□□□□ -0.67
NPIPB5-223	ENST00000543997	RNF216	Q9NWF9	866 aa	Predicted RBP	10.84	□□□□□ -0.67
NPIPB5-223	ENST00000543997	SHROOM4	Q9ULL8	1493 aa		10.83	□□□□□ -0.68
NPIPB5-223	ENST00000543997	CC2D2A	Q9P2K1	1620 aa		10.81	□□□□□ -0.68
NPIPB5-223	ENST00000543997	C1QBP	Q07021	282 aa	Known RBP	10.81	□□□□□ -0.68
NPIPB5-223	ENST00000543997	DCAF8L2	P0C7V8	631 aa		10.78	□□□□□ -0.68
NPIPB5-223	ENST00000543997	EIF4G1	Q04637	1599 aa	Known RBP	10.71	□□□□□ -0.69
NPIPB5-223	ENST00000543997	CUX2	O14529	1486 aa		10.57	□□□□□ -0.72
NPIPB5-223	ENST00000543997	DCAF1	Q9Y4B6	1507 aa		10.53	□□□□□ -0.72
NPIPB5-223	ENST00000543997	NCBP3	Q53F19	620 aa	Known RBP	10.52	□□□□□ -0.73
NPIPB5-223	ENST00000543997	SCRIB	Q14160	1630 aa		10.48	□□□□□ -0.73
NPIPB5-223	ENST00000543997	ZCCHC6	Q5VYS8	1495 aa	Known RBP	10.47	□□□□□ -0.73
NPIPB5-223	ENST00000543997	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.45	□□□□□ -0.74
NPIPB5-223	ENST00000543997	ERCC6	Q03468	1493 aa		10.37	□□□□□ -0.75
NPIPB5-223	ENST00000543997	NPM3	O75607	178 aa	Known RBP	10.29	□□□□□ -0.76
NPIPB5-223	ENST00000543997	TRIM41	Q8WV44	630 aa		10.28	□□□□□ -0.76
NPIPB5-223	ENST00000543997	NCAPD3	P42695	1498 aa		10.27	□□□□□ -0.77
NPIPB5-223	ENST00000543997	THOC2	Q8NI27	1593 aa	Known RBP	10.19	□□□□□ -0.78
NPIPB5-223	ENST00000543997	NES	P48681	1621 aa		10.18	□□□□□ -0.78
NPIPB5-223	ENST00000543997		U3KPZ7	1027 aa	Predicted RBP	10.17	□□□□□ -0.78
NPIPB5-223	ENST00000543997	POTEH	Q6S545	545 aa		10.15	□□□□□ -0.78
NPIPB5-223	ENST00000543997	ATAD2B	Q9ULI0	1458 aa		10.15	□□□□□ -0.78
NPIPB5-223	ENST00000543997	HMGXB3	Q12766	1538 aa		10.14	□□□□□ -0.79
NPIPB5-223	ENST00000543997	DSG3	P32926	999 aa		10.14	□□□□□ -0.79
NPIPB5-223	ENST00000543997	CAPN15	O75808	1086 aa		10.11	□□□□□ -0.79
NPIPB5-223	ENST00000543997	SPINK5	Q9NQ38	1064 aa	Predicted RBP	10.09	□□□□□ -0.79
NPIPB5-223	ENST00000543997	SMARCA2	P51531	1590 aa		10.09	□□□□□ -0.79
NPIPB5-223	ENST00000543997	LAMC3	Q9Y6N6	1575 aa		10.07	□□□□□ -0.8
NPIPB5-223	ENST00000543997	PDS5B	Q9NTI5	1447 aa		10.02	□□□□□ -0.81
NPIPB5-223	ENST00000543997	KIF21A	Q7Z4S6	1674 aa		10	□□□□□ -0.81
NPIPB5-223	ENST00000543997	SMARCA4	P51532	1647 aa		10	□□□□□ -0.81
NPIPB5-223	ENST00000543997	BAZ1B	Q9UIG0	1483 aa	Known RBP	9.99	□□□□□ -0.81
NPIPB5-223	ENST00000543997	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	9.98	□□□□□ -0.81
NPIPB5-223	ENST00000543997	WDR62	O43379	1518 aa		9.97	□□□□□ -0.81
NPIPB5-223	ENST00000543997	APLP2	Q06481	763 aa		9.97	□□□□□ -0.81
NPIPB5-223	ENST00000543997	MRC2	Q9UBG0	1479 aa		9.97	□□□□□ -0.81
NPIPB5-223	ENST00000543997	PEG3	Q9GZU2	1588 aa		9.97	□□□□□ -0.81
NPIPB5-223	ENST00000543997	OSCAR	Q8IYS5	282 aa		9.96	□□□□□ -0.82
NPIPB5-223	ENST00000543997	ZNF219	Q9P2Y4	722 aa	Predicted RBP	9.92	□□□□□ -0.82
NPIPB5-223	ENST00000543997	CADPS	Q9ULU8	1353 aa		9.9	□□□□□ -0.82
NPIPB5-223	ENST00000543997	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	9.89	□□□□□ -0.83
NPIPB5-223	ENST00000543997	SLC4A2	P04920	1241 aa		9.89	□□□□□ -0.83
NPIPB5-223	ENST00000543997	HNRNPUL2	Q1KMD3	747 aa	Known RBP	9.89	□□□□□ -0.83
NPIPB5-223	ENST00000543997	RIMBP3C	A6NJZ7	1639 aa		9.88	□□□□□ -0.83
NPIPB5-223	ENST00000543997	RIMBP3B	A6NNM3	1639 aa		9.88	□□□□□ -0.83
NPIPB5-223	ENST00000543997	RIMBP3	Q9UFD9	1639 aa		9.88	□□□□□ -0.83
NPIPB5-223	ENST00000543997	TRH	P20396	242 aa	Predicted RBP	9.87	□□□□□ -0.83
NPIPB5-223	ENST00000543997	ARHGEF11	O15085	1522 aa		9.82	□□□□□ -0.84
NPIPB5-223	ENST00000543997	KCNA4	P22459	653 aa		9.82	□□□□□ -0.84
NPIPB5-223	ENST00000543997	CEP164	Q9UPV0	1460 aa		9.82	□□□□□ -0.84
NPIPB5-223	ENST00000543997	ABCB7	O75027	752 aa		9.81	□□□□□ -0.84
NPIPB5-223	ENST00000543997	SAMD1	Q6SPF0	538 aa	Predicted RBP	9.79	□□□□□ -0.84
NPIPB5-223	ENST00000543997	MROH2B	Q7Z745	1585 aa		9.78	□□□□□ -0.84
NPIPB5-223	ENST00000543997	FANCD2	Q9BXW9	1451 aa		9.78	□□□□□ -0.84
NPIPB5-223	ENST00000543997	RBM42	Q9BTD8	480 aa	Known RBP	9.74	□□□□□ -0.85
NPIPB5-223	ENST00000543997	URB2	Q14146	1524 aa	Known RBP	9.73	□□□□□ -0.85
NPIPB5-223	ENST00000543997	CYB5RL	Q6IPT4	315 aa		9.73	□□□□□ -0.85
NPIPB5-223	ENST00000543997	CFTR	P13569	1480 aa		9.72	□□□□□ -0.85
NPIPB5-223	ENST00000543997	ARAP1	Q96P48	1450 aa		9.71	□□□□□ -0.86
NPIPB5-223	ENST00000543997	ZNF608	Q9ULD9	1512 aa	Predicted RBP	9.66	□□□□□ -0.86
NPIPB5-223	ENST00000543997	IFT140	Q96RY7	1462 aa		9.66	□□□□□ -0.86
NPIPB5-223	ENST00000543997	RSF1	Q96T23	1441 aa	Predicted RBP	9.66	□□□□□ -0.86
NPIPB5-223	ENST00000543997	WIZ	O95785	1651 aa		9.59	□□□□□ -0.87
NPIPB5-223	ENST00000543997	CHRDL2	Q6WN34	429 aa		9.59	□□□□□ -0.87
NPIPB5-223	ENST00000543997	EIF4G3	O43432	1585 aa	Known RBP	9.58	□□□□□ -0.88
NPIPB5-223	ENST00000543997	MYCN	P04198	464 aa	Predicted RBP	9.57	□□□□□ -0.88
NPIPB5-223	ENST00000543997	POLA2	Q14181	598 aa		9.56	□□□□□ -0.88
NPIPB5-223	ENST00000543997	CHD1	O14646	1710 aa		9.55	□□□□□ -0.88
NPIPB5-223	ENST00000543997	TOPBP1	Q92547	1522 aa		9.54	□□□□□ -0.88

Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms