RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 AEBP2Q6ZN18 517 aaPredicted RBP16.96■□□□□ 0.31
NPIPB3-211ENST00000542953 CHIC1Q5VXU3 224 aa15.94■□□□□ 0.14
NPIPB3-211ENST00000542953 SENP3Q9H4L4 574 aaPredicted RBP14.61□□□□□ -0.07
NPIPB3-211ENST00000542953 PHF23Q9BUL5 403 aaPredicted RBP14.33□□□□□ -0.12
NPIPB3-211ENST00000542953 FOXD1Q16676 465 aa13.57□□□□□ -0.24
NPIPB3-211ENST00000542953 POTEDQ86YR6 584 aa13□□□□□ -0.33
NPIPB3-211ENST00000542953 MSH5O43196 834 aa12.9□□□□□ -0.34
NPIPB3-211ENST00000542953 NISCHQ9Y2I1 1504 aa12.72□□□□□ -0.37
NPIPB3-211ENST00000542953 PIAS4Q8N2W9 510 aaPredicted RBP12.64□□□□□ -0.39
NPIPB3-211ENST00000542953 PLPPR3Q6T4P5 718 aa12.6□□□□□ -0.39
NPIPB3-211ENST00000542953 PPP6R1Q9UPN7 881 aa12.45□□□□□ -0.42
NPIPB3-211ENST00000542953 ADRA2BP18089 450 aa12.39□□□□□ -0.43
NPIPB3-211ENST00000542953 ABCC9O60706 1549 aa11.98□□□□□ -0.49
NPIPB3-211ENST00000542953 DNAJC5BQ9UF47 199 aa11.65□□□□□ -0.54
NPIPB3-211ENST00000542953 CCDC180Q9P1Z9 1646 aa11.6□□□□□ -0.55
NPIPB3-211ENST00000542953 DMRT2Q9Y5R5 561 aa11.51□□□□□ -0.57
NPIPB3-211ENST00000542953 SCAF1Q9H7N4 1312 aaKnown RBP11.45□□□□□ -0.58
NPIPB3-211ENST00000542953 MAPK8IP2Q13387 824 aaPredicted RBP11.45□□□□□ -0.58
NPIPB3-211ENST00000542953 RB1CC1Q8TDY2 1594 aa11.24□□□□□ -0.61
NPIPB3-211ENST00000542953 CACNB1Q02641 598 aaPredicted RBP11.19□□□□□ -0.62
NPIPB3-211ENST00000542953 NACADO15069 1562 aa11.09□□□□□ -0.63
NPIPB3-211ENST00000542953 PABPN1Q86U42 306 aaKnown RBP eCLIP11.07□□□□□ -0.64
NPIPB3-211ENST00000542953 DNAJC5Q9H3Z4 198 aa11.04□□□□□ -0.64
NPIPB3-211ENST00000542953 DCAF8L1A6NGE4 600 aa11.01□□□□□ -0.65
NPIPB3-211ENST00000542953 HOXD11P31277 338 aaPredicted RBP10.99□□□□□ -0.65
NPIPB3-211ENST00000542953 PPP4R3CPQ6ZMV5 832 aa10.96□□□□□ -0.65
NPIPB3-211ENST00000542953 BICRAQ9NZM4 1560 aa10.95□□□□□ -0.66
NPIPB3-211ENST00000542953 RNF39Q9H2S5 420 aa10.95□□□□□ -0.66
NPIPB3-211ENST00000542953 UNC13AQ9UPW8 1703 aa10.92□□□□□ -0.66
NPIPB3-211ENST00000542953 CECR2Q9BXF3 1484 aa10.87□□□□□ -0.67
NPIPB3-211ENST00000542953 CNKSR2Q8WXI2 1034 aa10.86□□□□□ -0.67
NPIPB3-211ENST00000542953 MYO15BQ96JP2 1530 aa10.85□□□□□ -0.67
NPIPB3-211ENST00000542953 RNF216Q9NWF9 866 aaPredicted RBP10.84□□□□□ -0.67
NPIPB3-211ENST00000542953 SHROOM4Q9ULL8 1493 aa10.83□□□□□ -0.68
NPIPB3-211ENST00000542953 CC2D2AQ9P2K1 1620 aa10.81□□□□□ -0.68
NPIPB3-211ENST00000542953 C1QBPQ07021 282 aaKnown RBP10.81□□□□□ -0.68
NPIPB3-211ENST00000542953 DCAF8L2P0C7V8 631 aa10.78□□□□□ -0.68
NPIPB3-211ENST00000542953 EIF4G1Q04637 1599 aaKnown RBP10.71□□□□□ -0.69
NPIPB3-211ENST00000542953 CUX2O14529 1486 aa10.57□□□□□ -0.72
NPIPB3-211ENST00000542953 DCAF1Q9Y4B6 1507 aa10.53□□□□□ -0.72
NPIPB3-211ENST00000542953 NCBP3Q53F19 620 aaKnown RBP10.52□□□□□ -0.73
NPIPB3-211ENST00000542953 SCRIBQ14160 1630 aa10.48□□□□□ -0.73
NPIPB3-211ENST00000542953 ZCCHC6Q5VYS8 1495 aaKnown RBP10.47□□□□□ -0.73
NPIPB3-211ENST00000542953 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.45□□□□□ -0.74
NPIPB3-211ENST00000542953 ERCC6Q03468 1493 aa10.37□□□□□ -0.75
NPIPB3-211ENST00000542953 NPM3O75607 178 aaKnown RBP10.29□□□□□ -0.76
NPIPB3-211ENST00000542953 TRIM41Q8WV44 630 aa10.28□□□□□ -0.76
NPIPB3-211ENST00000542953 NCAPD3P42695 1498 aa10.27□□□□□ -0.77
NPIPB3-211ENST00000542953 THOC2Q8NI27 1593 aaKnown RBP10.19□□□□□ -0.78
NPIPB3-211ENST00000542953 NESP48681 1621 aa10.18□□□□□ -0.78
NPIPB3-211ENST00000542953 U3KPZ7 1027 aaPredicted RBP10.17□□□□□ -0.78
NPIPB3-211ENST00000542953 POTEHQ6S545 545 aa10.15□□□□□ -0.78
NPIPB3-211ENST00000542953 ATAD2BQ9ULI0 1458 aa10.15□□□□□ -0.78
NPIPB3-211ENST00000542953 HMGXB3Q12766 1538 aa10.14□□□□□ -0.79
NPIPB3-211ENST00000542953 DSG3P32926 999 aa10.14□□□□□ -0.79
NPIPB3-211ENST00000542953 CAPN15O75808 1086 aa10.11□□□□□ -0.79
NPIPB3-211ENST00000542953 SPINK5Q9NQ38 1064 aaPredicted RBP10.09□□□□□ -0.79
NPIPB3-211ENST00000542953 SMARCA2P51531 1590 aa10.09□□□□□ -0.79
NPIPB3-211ENST00000542953 LAMC3Q9Y6N6 1575 aa10.07□□□□□ -0.8
NPIPB3-211ENST00000542953 PDS5BQ9NTI5 1447 aa10.02□□□□□ -0.81
NPIPB3-211ENST00000542953 KIF21AQ7Z4S6 1674 aa10□□□□□ -0.81
NPIPB3-211ENST00000542953 SMARCA4P51532 1647 aa10□□□□□ -0.81
NPIPB3-211ENST00000542953 BAZ1BQ9UIG0 1483 aaKnown RBP9.99□□□□□ -0.81
NPIPB3-211ENST00000542953 BAZ1AQ9NRL2 1556 aaPredicted RBP9.98□□□□□ -0.81
NPIPB3-211ENST00000542953 WDR62O43379 1518 aa9.97□□□□□ -0.81
NPIPB3-211ENST00000542953 APLP2Q06481 763 aa9.97□□□□□ -0.81
NPIPB3-211ENST00000542953 MRC2Q9UBG0 1479 aa9.97□□□□□ -0.81
NPIPB3-211ENST00000542953 PEG3Q9GZU2 1588 aa9.97□□□□□ -0.81
NPIPB3-211ENST00000542953 OSCARQ8IYS5 282 aa9.96□□□□□ -0.82
NPIPB3-211ENST00000542953 ZNF219Q9P2Y4 722 aaPredicted RBP9.92□□□□□ -0.82
NPIPB3-211ENST00000542953 CADPSQ9ULU8 1353 aa9.9□□□□□ -0.82
NPIPB3-211ENST00000542953 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.89□□□□□ -0.83
NPIPB3-211ENST00000542953 SLC4A2P04920 1241 aa9.89□□□□□ -0.83
NPIPB3-211ENST00000542953 HNRNPUL2Q1KMD3 747 aaKnown RBP9.89□□□□□ -0.83
NPIPB3-211ENST00000542953 RIMBP3CA6NJZ7 1639 aa9.88□□□□□ -0.83
NPIPB3-211ENST00000542953 RIMBP3BA6NNM3 1639 aa9.88□□□□□ -0.83
NPIPB3-211ENST00000542953 RIMBP3Q9UFD9 1639 aa9.88□□□□□ -0.83
NPIPB3-211ENST00000542953 TRHP20396 242 aaPredicted RBP9.87□□□□□ -0.83
NPIPB3-211ENST00000542953 ARHGEF11O15085 1522 aa9.82□□□□□ -0.84
NPIPB3-211ENST00000542953 KCNA4P22459 653 aa9.82□□□□□ -0.84
NPIPB3-211ENST00000542953 CEP164Q9UPV0 1460 aa9.82□□□□□ -0.84
NPIPB3-211ENST00000542953 ABCB7O75027 752 aa9.81□□□□□ -0.84
NPIPB3-211ENST00000542953 SAMD1Q6SPF0 538 aaPredicted RBP9.79□□□□□ -0.84
NPIPB3-211ENST00000542953 MROH2BQ7Z745 1585 aa9.78□□□□□ -0.84
NPIPB3-211ENST00000542953 FANCD2Q9BXW9 1451 aa9.78□□□□□ -0.84
NPIPB3-211ENST00000542953 RBM42Q9BTD8 480 aaKnown RBP9.74□□□□□ -0.85
NPIPB3-211ENST00000542953 URB2Q14146 1524 aaKnown RBP9.73□□□□□ -0.85
NPIPB3-211ENST00000542953 CYB5RLQ6IPT4 315 aa9.73□□□□□ -0.85
NPIPB3-211ENST00000542953 CFTRP13569 1480 aa9.72□□□□□ -0.85
NPIPB3-211ENST00000542953 ARAP1Q96P48 1450 aa9.71□□□□□ -0.86
NPIPB3-211ENST00000542953 ZNF608Q9ULD9 1512 aaPredicted RBP9.66□□□□□ -0.86
NPIPB3-211ENST00000542953 IFT140Q96RY7 1462 aa9.66□□□□□ -0.86
NPIPB3-211ENST00000542953 RSF1Q96T23 1441 aaPredicted RBP9.66□□□□□ -0.86
NPIPB3-211ENST00000542953 WIZO95785 1651 aa9.59□□□□□ -0.87
NPIPB3-211ENST00000542953 CHRDL2Q6WN34 429 aa9.59□□□□□ -0.87
NPIPB3-211ENST00000542953 EIF4G3O43432 1585 aaKnown RBP9.58□□□□□ -0.88
NPIPB3-211ENST00000542953 MYCNP04198 464 aaPredicted RBP9.57□□□□□ -0.88
NPIPB3-211ENST00000542953 POLA2Q14181 598 aa9.56□□□□□ -0.88
NPIPB3-211ENST00000542953 CHD1O14646 1710 aa9.55□□□□□ -0.88
NPIPB3-211ENST00000542953 TOPBP1Q92547 1522 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms